RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 L1RE1Q9UN81 338 aa16.67■□□□□ 0.26
LIMS1-210ENST00000449684 PCDHB5Q9Y5E4 795 aa16.67■□□□□ 0.26
LIMS1-210ENST00000449684 A0A1W2PRU2 124 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 KRBA1A5PL33 1030 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 KLRC4O43908 158 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 PHACTR2O75167 634 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 AOC1P19801 751 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 LHX1P48742 406 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 CYP24A1Q07973 514 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 STK4Q13043 487 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TRPC3Q13507 836 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 PSMD6Q15008 389 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TEAD2Q15562 447 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TANGO2Q6ICL3 276 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TRAPPC11Q7Z392 1133 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 C12orf56Q8IXR9 622 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TOP6BLQ8N6T0 577 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 PSMG2Q969U7 264 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 ELSPBP1Q96BH3 223 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 NOTCH4Q99466 2003 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 CGRRF1Q99675 332 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 ACBD6Q9BR61 282 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 DNAJC25Q9H1X3 360 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 ATXN3LQ9H3M9 355 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 TBC1D17Q9HA65 648 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 PTPRJQ12913 1337 aa16.66■□□□□ 0.26
LIMS1-210ENST00000449684 GALR2O43603 387 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 NPR3P17342 541 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 ACAT1P24752 427 aaKnown RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 GABRR2P28476 465 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 PCSK1P29120 753 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 EPHA5P54756 1037 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 SNW1Q13573 536 aaKnown RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 ARHGAP15Q53QZ3 475 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 FAM78AQ5JUQ0 283 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 CWF19L1Q69YN2 538 aaKnown RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 DPH6Q7L8W6 267 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 LRRTM3Q86VH5 581 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 KIAA0895Q8NCT3 520 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 SHKBP1Q8TBC3 707 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 ZSCAN18Q8TBC5 510 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 SPATA18Q8TC71 538 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 GIPC2Q8TF65 315 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 ATOH1Q92858 354 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-210ENST00000449684 SMARCD2Q92925 531 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 LPIN3Q9BQK8 851 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 PI4K2AQ9BTU6 479 aa16.65■□□□□ 0.26
LIMS1-210ENST00000449684 TSC2P49815 1807 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 FAM237AA0A1B0GTK4 181 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 DPYSL4O14531 572 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 PI15O43692 258 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 CALUO43852 315 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-210ENST00000449684 ZNF202O95125 648 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 HAPLN1P10915 354 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-210ENST00000449684 BIRC3Q13489 604 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 SLC44A4Q53GD3 710 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 INTS6LQ5JSJ4 861 aaKnown RBP16.64■□□□□ 0.25
LIMS1-210ENST00000449684 KRBA2Q6ZNG9 492 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 SPATA2LQ8IUW3 424 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-210ENST00000449684 YAF2Q8IY57 180 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 CXorf38Q8TB03 319 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 E2F7Q96AV8 911 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 ASB16Q96NS5 453 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 TRMT61BQ9BVS5 477 aaKnown RBP16.64■□□□□ 0.25
LIMS1-210ENST00000449684 SNX25Q9H3E2 840 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 BRD9Q9H8M2 597 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 GTF3C4Q9UKN8 822 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 SIT1Q9Y3P8 196 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 KMT2EQ8IZD2 1858 aa16.64■□□□□ 0.25
LIMS1-210ENST00000449684 H0Y858 1186 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 PDXKO00764 312 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 PRR29P0C7W0 189 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 CDC25CP30307 473 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 RPL10AP62906 217 aaKnown RBP16.63■□□□□ 0.25
LIMS1-210ENST00000449684 TNNC1P63316 161 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 PRKCQQ04759 706 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 TCF15Q12870 199 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 GRM2Q14416 872 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 MLF2Q15773 248 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-210ENST00000449684 SOWAHAQ2M3V2 549 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 SCARA3Q6AZY7 606 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 PHLDB3Q6NSJ2 640 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 TMC8Q8IU68 726 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 ZSWIM3Q96MP5 696 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 PLA2G2FQ9BZM2 168 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 GOLPH3LQ9H4A5 285 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 FRMD4BQ9Y2L6 1034 aa16.63■□□□□ 0.25
LIMS1-210ENST00000449684 MOSPD3O75425 235 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 CST3P01034 146 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-210ENST00000449684 NR3C1P04150 777 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 PSMC3P17980 439 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 ATF6P18850 670 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 VIPR2P41587 438 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 AP3M2P53677 418 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 DPYDQ12882 1025 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 WDR72Q3MJ13 1102 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 GPR158Q5T848 1215 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 CEP135Q66GS9 1140 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 C4orf50Q6ZRC1 276 aa16.62■□□□□ 0.25
LIMS1-210ENST00000449684 ALYREFQ86V81 257 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms