RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CUL4BQ13620 913 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 UBXN2BQ14CS0 331 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 TPRG1Q6ZUI0 275 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 GRAMD1CQ8IYS0 662 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 LRRC52Q8N7C0 313 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 GIPC2Q8TF65 315 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 LRRC3BQ96PB8 259 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 MTMR12Q9C0I1 747 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 GPR88Q9GZN0 384 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 BRD9Q9H8M2 597 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 IL21Q9HBE4 155 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 GDAP2Q9NXN4 497 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 FAM13BQ9NYF5 915 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 ITGA11Q9UKX5 1188 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 CFAP45Q9UL16 551 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 VPS13AQ96RL7 3174 aa22.34■■□□□ 1.17
SDC1-205ENST00000447124 FAM186AA6NE01 2351 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.33■■□□□ 1.17
SDC1-205ENST00000447124 HEPACAM2A8MVW5 462 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 CLIC2O15247 247 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 KRT19P08727 400 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 PSMC3P17980 439 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 GABRR2P28476 465 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 GDI1P31150 447 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 AFMP43652 599 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 BFSP1Q12934 665 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 C1orf210Q8IVY1 113 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 MFSD6LQ8IWD5 586 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 NELFCDQ8IXH7 590 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 DCP1BQ8IZD4 617 aaKnown RBP22.33■■□□□ 1.17
SDC1-205ENST00000447124 MAML2Q8IZL2 1156 aaPredicted RBP22.33■■□□□ 1.17
SDC1-205ENST00000447124 RDH13Q8NBN7 331 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 OSBPL6Q9BZF3 934 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 ATXN3LQ9H3M9 355 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 MAGEF1Q9HAY2 307 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 AGPAT3Q9NRZ7 376 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 SERTAD1Q9UHV2 236 aa22.33■■□□□ 1.17
SDC1-205ENST00000447124 HCRTO43612 131 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 ACAT1P24752 427 aaKnown RBP22.32■■□□□ 1.16
SDC1-205ENST00000447124 TARSP26639 723 aaKnown RBP22.32■■□□□ 1.16
SDC1-205ENST00000447124 SMARCB1Q12824 385 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 ITIH5Q86UX2 942 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 ARID3BQ8IVW6 561 aaPredicted RBP22.32■■□□□ 1.16
SDC1-205ENST00000447124 SPPL2BQ8TCT7 592 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 C2orf15Q8WU43 125 aaKnown RBP22.32■■□□□ 1.16
SDC1-205ENST00000447124 DNASE1L2Q92874 299 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 PKMYT1Q99640 499 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 ACBD6Q9BR61 282 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 SLITRK6Q9H5Y7 841 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 SLC39A2Q9NP94 309 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 ABI2Q9NYB9 513 aaPredicted RBP22.32■■□□□ 1.16
SDC1-205ENST00000447124 SNX9Q9Y5X1 595 aa22.32■■□□□ 1.16
SDC1-205ENST00000447124 TCHHQ07283 1943 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 PVALEFA0A1B0GWK0 134 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 PRR23AA6NEV1 266 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 GABRDO14764 452 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 KLRC4O43908 158 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 HUS1O60921 280 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 TMEM191BP0C7N4 346 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 GPR15P49685 360 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 CCDC142Q17RM4 750 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 SOWAHAQ2M3V2 549 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 LIMS2Q7Z4I7 341 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 ZNF687Q8N1G0 1237 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 FAM200AQ8TCP9 573 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 DEPDC1BQ8WUY9 529 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 IRF7Q92985 503 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 CLDN23Q96B33 292 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 PI4K2AQ9BTU6 479 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 TRPV5Q9NQA5 729 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 DDX43Q9NXZ2 648 aaKnown RBP22.31■■□□□ 1.16
SDC1-205ENST00000447124 PCDHB5Q9Y5E4 795 aa22.31■■□□□ 1.16
SDC1-205ENST00000447124 ARNTLO00327 626 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 CST3P01034 146 aaPredicted RBP22.3■■□□□ 1.16
SDC1-205ENST00000447124 SP9P0CG40 484 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 HMGA1P17096 107 aaKnown RBP22.3■■□□□ 1.16
SDC1-205ENST00000447124 CYP4F8P98187 520 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 SURF1Q15526 300 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 DUOXA2Q1HG44 320 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 GPR158Q5T848 1215 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 ZNF852Q6ZMS4 543 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 TMEM150AQ86TG1 271 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 TMEM86AQ8N2M4 240 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 TOP6BLQ8N6T0 577 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 ANKRD36BP1Q96IX9 119 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 NELL2Q99435 816 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 KIAA1586Q9HCI6 787 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 GTF3C4Q9UKN8 822 aa22.3■■□□□ 1.16
SDC1-205ENST00000447124 ZNF263O14978 683 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 ACTN4O43707 911 aaKnown RBP22.29■■□□□ 1.16
SDC1-205ENST00000447124 SLFN14P0C7P3 912 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 TSPY1Q01534 308 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 BMT2Q1RMZ1 405 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 INTS6LQ5JSJ4 861 aaKnown RBP22.29■■□□□ 1.16
SDC1-205ENST00000447124 SDHAF4Q5VUM1 108 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 TRAPPC11Q7Z392 1133 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 STKLD1Q8NE28 680 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 NKD2Q969F2 451 aaPredicted RBP22.29■■□□□ 1.16
SDC1-205ENST00000447124 E2F7Q96AV8 911 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 PAGE5Q96GU1 130 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms