RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ATP6V0A1Q93050 837 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 DBNDD2Q9BQY9 259 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SLC25A18Q9H1K4 315 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PABPC3Q9H361 631 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 SLC6A20Q9NP91 592 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TMEM160Q9NX00 188 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CORO1CQ9ULV4 474 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 HSF4Q9ULV5 492 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CLCA2Q9UQC9 943 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 LYVE1Q9Y5Y7 322 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 GNAT3A8MTJ3 354 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 F8W031 263 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 PEX12O00623 359 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SGTAO43765 313 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ADAM11O75078 769 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TMEM63AO94886 807 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ANXA1P04083 346 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PRKCBP05771 671 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 QDPRP09417 244 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 MALP21145 153 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 HERVK_113P62684 666 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ZBTB16Q05516 673 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RNASELQ05823 741 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 NAA25Q14CX7 972 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PPA1Q15181 289 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 BTBD16Q32M84 506 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PRAMEF14Q5SWL7 426 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 DEPDC1Q5TB30 811 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 STEAP3Q658P3 488 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RINT1Q6NUQ1 792 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 IYDQ6PHW0 289 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PNPLA5Q7Z6Z6 429 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 SLC9B2Q86UD5 537 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 GALNT11Q8NCW6 608 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CYP2W1Q8TAV3 490 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SCFD2Q8WU76 684 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 C16orf45Q96MC5 204 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 PDCD2LQ9BRP1 358 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ZNF518BQ9C0D4 1074 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 MTG2Q9H4K7 406 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 THAP9Q9H5L6 903 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 BAG5Q9UL15 447 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RWDD3Q9Y3V2 267 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 DTNAQ9Y4J8 743 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SHISA3A0PJX4 238 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 KRBA1A5PL33 1030 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 H3BNC9 293 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TNPO2O14787 897 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 KLK10O43240 276 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 KERAO60938 352 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 COQ9O75208 318 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 GJB3O75712 270 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 FAM155BO75949 473 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 P4HA1P13674 534 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PSMC2P35998 433 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 ANP32AP39687 249 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 CCR5P51681 352 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 NOMO3P69849 1222 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ATP8B2P98198 1209 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TFCP2Q12800 502 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 EPS8Q12929 822 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 PDCLQ13371 301 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ADAM15Q13444 863 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CHRNA2Q15822 529 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 SKIDA1Q1XH10 827 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CRTC1Q6UUV9 634 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 UNQ6494/PRO21346Q6UXR6 183 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ARHGAP30Q7Z6I6 1101 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 CABP7Q86V35 215 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 NLRP10Q86W26 655 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 METTL23Q86XA0 190 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CILP2Q8IUL8 1156 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CCDC155Q8N6L0 562 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 CTCFLQ8NI51 663 aaPredicted RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 SCAMP5Q8TAC9 235 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 RBM17Q96I25 401 aaKnown RBP2.53□□□□□ -2
CCDC88A-208ENST00000444458 COX4I2Q96KJ9 171 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TWNKQ96RR1 684 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ITPAQ9BY32 194 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 HDAC8Q9BY41 377 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 C2orf40Q9H1Z8 148 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 FAM105AQ9NUU6 356 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 UCKL1Q9NWZ5 548 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 TAS2R10Q9NYW0 307 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 KLHL20Q9Y2M5 609 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 ACTL7BQ9Y614 415 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 AP1M2Q9Y6Q5 423 aa2.53□□□□□ -2
CCDC88A-208ENST00000444458 FLT1P17948 1338 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 TRIM43BA6NCK2 446 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 STX16-NPEPL1H3BU86 382 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 PYCARD-AS1I3L0S3 204 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 STX16O14662 325 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP6R2O75170 966 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 GUCY1B2O75343 617 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 WFS1O76024 890 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 GNAI2P04899 355 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 NPPBP16860 134 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 HDCP19113 662 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 PRKCHP24723 683 aa2.53□□□□□ -2.01
CCDC88A-208ENST00000444458 MCM7P33993 719 aa2.53□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms