RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NIFKQ9BYG3 293 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 FHDC1Q9C0D6 1143 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 ADAMTS5Q9UNA0 930 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 PI4K2BG5E9Z4 385 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 SMAPO00193 183 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 DCTN3O75935 186 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 ASS1P00966 412 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 KRT15P19012 456 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 ICAM3P32942 547 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 CDH5P33151 784 aaPredicted RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 PHBP35232 272 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 RPL7AP62424 266 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 ATP11AP98196 1134 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 SP4Q02446 784 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 SURF1Q15526 300 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 PDK4Q16654 411 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 ZC3H12AQ5D1E8 599 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 SPDYAQ5MJ70 313 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 RNASEH2BQ5TBB1 312 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 ZPBP2Q6X784 338 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 POLNQ7Z5Q5 900 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 WDR49Q8IV35 697 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 BRSK2Q8IWQ3 736 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 TTC13Q8NBP0 860 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 OR5B17Q8NGF7 314 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 N4BP2L2Q92802 583 aaPredicted RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 L3MBTL3Q96JM7 780 aaPredicted RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 C12orf42Q96LP6 360 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 TARS2Q9BW92 718 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 ACAD9Q9H845 621 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 VPS37BQ9H9H4 285 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 CYP39A1Q9NYL5 469 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 PSMC3IPQ9P2W1 217 aaPredicted RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 PNMA3Q9UL41 463 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 PHTF1Q9UMS5 762 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.91□□□□□ -0.5
USP4-205ENST00000431357 IVNS1ABPQ9Y6Y0 642 aa11.91□□□□□ -0.5
USP4-205ENST00000431357 SIP14410 1827 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 POC1B-GALNT4F8VUJ3 575 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 KRT16P08779 473 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 EIF4BP23588 611 aaKnown RBP11.9□□□□□ -0.5
USP4-205ENST00000431357 GBP2P32456 591 aaPredicted RBP11.9□□□□□ -0.5
USP4-205ENST00000431357 TGFB2P61812 414 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 MGAT5Q09328 741 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PARP6Q2NL67 630 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ATP13A4Q4VNC1 1196 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PPP1R15BQ5SWA1 713 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 DCAF15Q66K64 600 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SEPT14Q6ZU15 432 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 LRRC8CQ8TDW0 803 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 AGAP11Q8TF27 550 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 STK32BQ9NY57 414 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ANKFY1Q9P2R3 1169 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 FBXO40Q9UH90 709 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ZNF214Q9UL59 606 aaPredicted RBP11.9□□□□□ -0.5
USP4-205ENST00000431357 STRIP2Q9ULQ0 834 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PCDHGC3Q9UN70 934 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SPAG7O75391 227 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ANP32DO95626 131 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 TSHRP16473 764 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ATP4AP20648 1035 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 CDKN2BP42772 138 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SLC8A3P57103 927 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 ZNF280AP59817 542 aaPredicted RBP11.9□□□□□ -0.5
USP4-205ENST00000431357 ZNF252P-AS1Q0IIN9 211 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 CRYMQ14894 314 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SGSM1Q2NKQ1 1148 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 EFHC2Q5JST6 749 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PRUNE1Q86TP1 453 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SCYL3Q8IZE3 742 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 AGGF1Q8N302 714 aaeCLIP11.9□□□□□ -0.5
USP4-205ENST00000431357 ZNF280CQ8ND82 737 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 SLC35B2Q8TB61 432 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 WNK4Q96J92 1243 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 MCEEQ96PE7 176 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 TEX13BQ9BXU2 312 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 NRBP2Q9NSY0 501 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 KLHL11Q9NVR0 708 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 C15orf41Q9Y2V0 281 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PPME1Q9Y570 386 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 FER1L6Q2WGJ9 1857 aa11.9□□□□□ -0.5
USP4-205ENST00000431357 PARP14Q460N5 1801 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 C19orf81C9J6K1 198 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 F8VP50 259 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ADCY3O60266 1144 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 EDF1O60869 148 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 ZWINTO95229 277 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ZSCAN5DPP0CG00 497 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 POLR2BP30876 1174 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 SSTR3P32745 418 aaPredicted RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 EFNA5P52803 228 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 GEMIN4P57678 1058 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 YWHAEP62258 255 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 ADCY1Q08828 1119 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PDIA2Q13087 525 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 MOGSQ13724 837 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 STXBP2Q15833 593 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PKN2Q16513 984 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 ZBTB41Q5SVQ8 909 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 HHATQ5VTY9 493 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms