RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PCSK9Q8NBP7 692 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 FAM46DQ8NEK8 389 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 SNX19Q92543 992 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 PTCD3Q96EY7 689 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 SUCLG2Q96I99 432 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 SPATA5L1Q9BVQ7 753 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 CYP4F11Q9HBI6 524 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 HESX1Q9UBX0 185 aa7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 TESQ9UGI8 421 aaKnown RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.06□□□□□ -1.28
CCDC88A-206ENST00000430086 MAST3O60307 1309 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 ISM1B1AKI9 464 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 GOLIM4O00461 696 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 FOXN1O15353 648 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 VPS4BO75351 444 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 GRPP07492 148 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 GATA3P23771 443 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 DPTQ07507 201 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 BOP1Q14137 746 aaKnown RBP7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 KIAA0753Q2KHM9 967 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 PREPLQ4J6C6 727 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 LAIR1Q6GTX8 287 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 ZNF783Q6ZMS7 281 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 OR6B3Q8NGW1 331 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 SSH3Q8TE77 659 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 LRTOMTQ8WZ04 291 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 TTC17Q96AE7 1141 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 TIFAQ96CG3 184 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 OSBPL9Q96SU4 736 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 POLR3GLQ9BT43 218 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 BHMT2Q9H2M3 363 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 SMOC2Q9H3U7 446 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 DDX21Q9NR30 783 aaKnown RBP eCLIP7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 ING1Q9UK53 422 aaPredicted RBP7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 TPCN1Q9ULQ1 816 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 RAD54BQ9Y620 910 aa7.05□□□□□ -1.28
CCDC88A-206ENST00000430086 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 SLPIP03973 132 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 SLC7A1P30825 629 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 VIPR2P41587 438 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 NPTX2P47972 431 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 GCLCP48506 637 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 NDUFV1P49821 464 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 POLD3Q15054 466 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 FAM9AQ8IZU1 332 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 Q96MF0 132 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 MOGAT1Q96PD6 335 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 CASS4Q9NQ75 786 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 DMTF1Q9Y222 760 aa7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 EPN1Q9Y6I3 576 aaPredicted RBP7.04□□□□□ -1.28
CCDC88A-206ENST00000430086 USP19O94966 1318 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 A0A087WWL8 130 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 BTN3A1O00481 513 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 TBX3O15119 743 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 PROM1O43490 865 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 MYF5P13349 255 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 ITGALP20701 1170 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 SLC11A2P49281 568 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 INHBCP55103 352 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 SEMA5AQ13591 1074 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 LONRF3Q496Y0 759 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 MRGPRGQ86SM5 289 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 APIPQ96GX9 242 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 SORCS2Q96PQ0 1159 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 TOR3AQ9H497 397 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 SMURF2Q9HAU4 748 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 KCTD5Q9NXV2 234 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 XPR1Q9UBH6 696 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 TMX2Q9Y320 296 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 PAXBP1Q9Y5B6 917 aa7.03□□□□□ -1.28
CCDC88A-206ENST00000430086 A0A0B4J269 797 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 TRIAP1O43715 76 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 ESRRBO95718 433 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 ATXN1LP0C7T5 689 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 CHRM3P20309 590 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 SEC24CP53992 1094 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 UCP3P55916 312 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 WNT3P56703 355 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 TUBB3Q13509 450 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 IQCB1Q15051 598 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 SF3B3Q15393 1217 aaKnown RBP7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 HECTD2Q5U5R9 776 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 LMBRD2Q68DH5 695 aaPredicted RBP7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 PPP4R4Q6NUP7 873 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 VWA1Q6PCB0 445 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 BEND2Q8NDZ0 799 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 SUPT20HQ8NEM7 779 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 CCDC136Q96JN2 1154 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 SLC46A1Q96NT5 459 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 AIFM2Q9BRQ8 373 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 TTPALQ9BTX7 342 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 LRRC27Q9C0I9 530 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 PACSIN3Q9UKS6 424 aa7.02□□□□□ -1.29
CCDC88A-206ENST00000430086 F5H697 171 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 MYO1CO00159 1063 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 DCLK1O15075 740 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 TBC1D4O60343 1298 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 MGEA5O60502 916 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 RHOBTB3O94955 611 aa7.01□□□□□ -1.29
CCDC88A-206ENST00000430086 GCP02774 474 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms