RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 TRIM55Q9BYV6 548 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ANKRD2Q9GZV1 360 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 GOPCQ9HD26 462 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 PALMDQ9NP74 551 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 NLRC5Q86WI3 1866 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 PCNX3Q9H6A9 2034 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DCAF8L1A6NGE4 600 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 GSRP00390 522 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZNF24P17028 368 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 SERPINB3P29508 390 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 FDFT1P37268 417 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 RELAQ04206 551 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 GABPAQ06546 454 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DLG1Q12959 904 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MSLNQ13421 630 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 PRPF4BQ13523 1007 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 DNAL1Q4LDG9 190 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 RIPOR1Q6ZS17 1223 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TSHZ1Q6ZSZ6 1077 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DNAJC10Q8IXB1 793 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 HELBQ8NG08 1087 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 MGARPQ8TDB4 240 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DQX1Q8TE96 717 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 TANGO6Q9C0B7 1094 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MKS1Q9NXB0 559 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MAD1L1Q9Y6D9 718 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 FRYQ5TBA9 3013 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DNAJC13O75165 2243 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 HTTP42858 3142 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MATN2O00339 956 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TDP2O95551 362 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 PSMD7P51665 324 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CDK16Q00536 496 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TAZQ16635 292 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MAPK6Q16659 721 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ESCO1Q5FWF5 840 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 NEPROQ6NW34 567 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZNF449Q6P9G9 518 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 RAB3IL1Q8TBN0 382 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 OXCT2Q9BYC2 517 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZNF341Q9BYN7 854 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 RANBP17Q9H2T7 1088 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 STN1Q9H668 368 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 ARL8BQ9NVJ2 186 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TAS2R14Q9NYV8 317 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 C6orf203Q9P0P8 240 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZFP69BQ9UJL9 534 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 EXOC1LA0A1B0GW35 172 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 H0YJX3 145 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 NDC80O14777 642 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TOM1O60784 492 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CLPTM1O96005 669 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TSHRP16473 764 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 RRM1P23921 792 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CIITAP33076 1130 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 MAGEA4P43358 317 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 VCPP55072 806 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 SNAPC2Q13487 334 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZRSR2Q15696 482 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 CBWD6Q4V339 395 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CBWD3Q5JTY5 395 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CBWD5Q5RIA9 395 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 LRRC6Q86X45 466 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 STMN2Q93045 179 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 C9orf72Q96LT7 481 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CFAP57Q96MR6 1250 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CCDC85AQ96PX6 553 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 DOK1Q99704 481 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 NEURL2Q9BR09 285 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ZCWPW1Q9H0M4 648 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 NDE1Q9NXR1 346 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ANAPC1Q9H1A4 1944 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CAMTA2O94983 1202 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 TROVE2P10155 538 aaKnown RBP eCLIP5.41□□□□□ -1.54
RIF1-203ENST00000428287 AMPD1P23109 780 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ACAT1P24752 427 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 RPA3P35244 121 aaPredicted RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 GSTM4Q03013 218 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 SF3A3Q12874 501 aaKnown RBP eCLIP5.41□□□□□ -1.54
RIF1-203ENST00000428287 KLHL35Q6PF15 583 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 SCUBE1Q8IWY4 988 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 PCYOX1LQ8NBM8 494 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 DDX1Q92499 740 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 SLC5A5Q92911 643 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 CRNKL1Q9BZJ0 848 aaKnown RBP5.41□□□□□ -1.54
RIF1-203ENST00000428287 STX8Q9UNK0 236 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 AK5Q9Y6K8 562 aa5.41□□□□□ -1.54
RIF1-203ENST00000428287 ASTN2O75129 1339 aaPredicted RBP5.4□□□□□ -1.54
RIF1-203ENST00000428287 MYPNQ86TC9 1320 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 A0A088AWK7 358 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 PIK3CDO00329 1044 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 THRAP10827 490 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 CYP19A1P11511 503 aaPredicted RBP5.4□□□□□ -1.54
RIF1-203ENST00000428287 PGM1P36871 562 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 IRX4P78413 519 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 Q4G0T1 1027 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 KRT28Q7Z3Y7 464 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 RASSF3Q86WH2 238 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 CLMNQ96JQ2 1002 aa5.4□□□□□ -1.54
RIF1-203ENST00000428287 CCDC113Q9H0I3 377 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms