RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 ACAT1P24752 427 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ATP5DP30049 168 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 STX2P32856 288 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 HARS2P49590 506 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SEPT6Q14141 434 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 MUM1Q2TAK8 710 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 Q4G0T1 1027 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 NOMO2Q5JPE7 1267 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SPATA31D4Q6ZUB0 917 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF410Q86VK4 478 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CHSY1Q86X52 802 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 UBA3Q8TBC4 463 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SNX19Q92543 992 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 HOMER3Q9NSC5 361 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 FAM8A1Q9UBU6 413 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PCDHB2Q9Y5E7 798 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PASKQ96RG2 1323 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 GMNCA6NCL1 334 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 RCCD1A6NED2 376 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ZSCAN5CA6NGD5 496 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PFDN6O15212 129 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 RAD51CO43502 376 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CRCPO75575 148 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 POLE2P56282 527 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CST9Q5W186 159 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ACOT1Q86TX2 421 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CACUL1Q86Y37 369 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CBWD2Q8IUF1 395 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 MCOLN1Q9GZU1 580 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 INTS2Q9H0H0 1204 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SLC40A1Q9NP59 571 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CNOT8Q9UFF9 292 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 KNL1Q8NG31 2342 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PARP4Q9UKK3 1724 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 SPATA31C2B4DYI2 1134 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 MLLT1Q03111 559 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ITIH3Q06033 890 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CAPRIN2Q6IMN6 1127 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PSRC1Q6PGN9 363 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 WDR59Q6PJI9 974 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 CROCCP2Q86T23 111 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 PPTC7Q8NI37 304 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 KCNV2Q8TDN2 545 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 UCMAQ8WVF2 138 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ACSF2Q96CM8 615 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 ELAC2Q9BQ52 826 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 VCXQ9H320 206 aa11.2□□□□□ -0.62
TCOF1-204ENST00000427724 DHX35Q9H5Z1 703 aaKnown RBP11.2□□□□□ -0.62
TCOF1-204ENST00000427724 UTRNP46939 3433 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 CENPPQ6IPU0 288 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 CSGALNACT1Q8TDX6 532 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 CCT6BQ92526 530 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 ERLEC1Q96DZ1 483 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 MTMR8Q96EF0 704 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 C12orf42Q96LP6 360 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.19□□□□□ -0.629e-7■□□□□ 9.5
TCOF1-204ENST00000427724 CBWD1Q9BRT8 395 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 PACSIN1Q9BY11 444 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 PADI3Q9ULW8 664 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 HEY1Q9Y5J3 304 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 SLITRK3O94933 977 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 UCHL3P15374 230 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 PAX7P23759 505 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 PPM1AP35813 382 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 PBX1P40424 430 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF131P52739 623 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 FUT2Q10981 343 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 FBXO47Q5MNV8 452 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 MTHFD1LQ6UB35 978 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 NIPA1Q7RTP0 329 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 MSL3Q8N5Y2 521 aaKnown RBP11.19□□□□□ -0.62
TCOF1-204ENST00000427724 TRIM4Q9C037 500 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 EPN3Q9H201 632 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 NOP53Q9NZM5 478 aaKnown RBP11.19□□□□□ -0.62
TCOF1-204ENST00000427724 MYO7AQ13402 2215 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 ACKR2O00590 384 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 ADH1AP07327 375 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 RRP1BQ14684 758 aaKnown RBP11.19□□□□□ -0.62
TCOF1-204ENST00000427724 GIPC2Q8TF65 315 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 STMN2Q93045 179 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 MUC3BQ9H195 1237 aa11.19□□□□□ -0.62
TCOF1-204ENST00000427724 REXO2Q9Y3B8 237 aaKnown RBP11.19□□□□□ -0.62
TCOF1-204ENST00000427724 GRID2IPA4D2P6 1211 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ARVCFO00192 962 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 CYP26A1O43174 497 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ASMTLO95671 621 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 EFHC2Q5JST6 749 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 C6orf163Q5TEZ5 329 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ZBTB45Q96K62 511 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TEPSINQ96N21 525 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 SP110Q9HB58 689 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ANAPC7Q9UJX3 599 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 DIS3Q9Y2L1 958 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 UBIAD1Q9Y5Z9 338 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 SCAMP3O14828 347 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TTI1O43156 1089 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 MYBL2P10244 700 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ITIH5Q86UX2 942 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 CD302Q8IX05 232 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms