RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ARHGAP28Q9P2N2 729 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 HAO1Q9UJM8 370 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 STRIP2Q9ULQ0 834 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 TRIM33Q9UPN9 1127 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 LRCH1Q9Y2L9 728 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 PCDHB4Q9Y5E5 795 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 PCDHA10Q9Y5I2 948 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 hCG_1818297A0A087WSY0 165 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 IQANK1A0A1B0GTG1 560 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 TMEM191CA6NGB0 347 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 E7ESA3 106 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 SPAG7O75391 227 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 FAM155BO75949 473 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 C4BPAP04003 597 aaKnown RBP11.6□□□□□ -0.55
LIMS1-207ENST00000422797 FESP07332 822 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 KRT7P08729 469 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 TMEM191BP0C7N4 346 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 CD58P19256 250 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 MMP8P22894 467 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 RPA3P35244 121 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-207ENST00000422797 LIG4P49917 911 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 GRM1Q13255 1194 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 TBCCQ15814 346 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 CIAPIN1Q6FI81 312 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 DNAJC24Q6P3W2 148 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 CCDC62Q6P9F0 684 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 LVRNQ6Q4G3 990 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 OTOAQ7RTW8 1153 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 ZBED8Q8IZ13 594 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 PPFIBP2Q8ND30 876 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 SYTL5Q8TDW5 730 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-207ENST00000422797 PYROXD1Q8WU10 500 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 FAM213AQ9BRX8 229 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 BTBD10Q9BSF8 475 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 GPRC5CQ9NQ84 441 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 DNPEPQ9ULA0 475 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 BCS1LQ9Y276 419 aa11.6□□□□□ -0.55
LIMS1-207ENST00000422797 FARP1Q9Y4F1 1045 aaPredicted RBP11.6□□□□□ -0.55
LIMS1-207ENST00000422797 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.6□□□□□ -0.55
LIMS1-207ENST00000422797 ZNFX1Q9P2E3 1918 aaKnown RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 SPDYE2BA6NHP3 402 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 KLF11O14901 512 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 NVLO15381 856 aaKnown RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 PSAPP07602 524 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 SPDYE6P0CI01 402 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 T-ENOLP0DO92 83 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 TNNI1P19237 187 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 CCND2P30279 289 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 ZNF132P52740 706 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 YWHAEP62258 255 aaKnown RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 MRPS9P82933 396 aaKnown RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 PDIA2Q13087 525 aaKnown RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 PGM5Q15124 567 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 CCDC6Q16204 474 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 UGCGQ16739 394 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 MUM1Q2TAK8 710 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 C11orf91Q3C1V1 193 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 TAF1BQ53T94 588 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 C4orf50Q6ZRC1 276 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 FAM83AQ86UY5 434 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 THNSL1Q8IYQ7 743 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 TMEM35BQ8NCS4 154 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 SLC35B2Q8TB61 432 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 NSL1Q96IY1 281 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 CEP170P1Q96L14 293 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 CYTH2Q99418 400 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 PKD2L1Q9P0L9 805 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 ZMYND8Q9ULU4 1186 aaPredicted RBP11.59□□□□□ -0.55
LIMS1-207ENST00000422797 SNCAIPQ9Y6H5 919 aa11.59□□□□□ -0.55
LIMS1-207ENST00000422797 STAM2O75886 525 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 ATF7P17544 494 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 KRT4P19013 534 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 POLR2BP30876 1174 aaKnown RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 PTDSS1P48651 473 aaKnown RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 CDK16Q00536 496 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 SPP2Q13103 211 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 SLC1A5Q15758 541 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 DBN1Q16643 649 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 GSTA3Q16772 222 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 HADHQ16836 314 aaKnown RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 ZFYVE27Q5T4F4 411 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 SEPT14Q6ZU15 432 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 ANO5Q75V66 913 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 PDIK1LQ8N165 341 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 C4orf33Q8N1A6 199 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 BANPQ8N9N5 519 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 IL31RAQ8NI17 732 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 RAB3IL1Q8TBN0 382 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 STMN2Q93045 179 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 GJD4Q96KN9 370 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-207ENST00000422797 PWWP2AQ96N64 755 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 SYNCQ9H7C4 482 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 MANSC1Q9H8J5 431 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 PDLIM7Q9NR12 457 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 COL20A1Q9P218 1284 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 ZNF212Q9UDV6 495 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 DNAJB4Q9UDY4 337 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 RABGEF1Q9UJ41 708 aa11.58□□□□□ -0.56
LIMS1-207ENST00000422797 AGO2Q9UKV8 859 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms