RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ALDH1A3P47895 512 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 WNT7BP56706 349 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 LILRA4P59901 499 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 KRT85P78386 507 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 ATP2C1P98194 919 aaPredicted RBP13.97□□□□□ -0.17
LINC00339-202ENST00000416769 DNM1Q05193 864 aaKnown RBP13.97□□□□□ -0.17
LINC00339-202ENST00000416769 GRIN1Q05586 938 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 LRRC32Q14392 662 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 SF3A1Q15459 793 aaKnown RBP13.97□□□□□ -0.17
LINC00339-202ENST00000416769 ST3GAL2Q16842 350 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 SPATA1Q5VX52 437 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 C9orf57Q5W0N0 161 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 TCEAL6Q6IPX3 200 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 FSTL4Q6MZW2 842 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 CEP68Q76N32 757 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 KBTBD6Q86V97 674 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 TCEAL3Q969E4 200 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 USP28Q96RU2 1077 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 IER2Q9BTL4 223 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 ARRDC1-AS1Q9H2J1 176 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 C17orf75Q9HAS0 396 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 PLEKHA5Q9HAU0 1116 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 TMLHEQ9NVH6 421 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 MAFFQ9ULX9 164 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 CLIC4Q9Y696 253 aa13.97□□□□□ -0.17
LINC00339-202ENST00000416769 MORC2Q9Y6X9 1032 aaPredicted RBP13.97□□□□□ -0.17
LINC00339-202ENST00000416769 FRYQ5TBA9 3013 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 K7ENM7 598 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 LAD1O00515 517 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 HNRNPDLO14979 420 aaKnown RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 PAPSS2O95340 614 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 ARSAP15289 507 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 TYMPP19971 482 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 CYP3A5P20815 502 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 NASPP49321 788 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 ACOT2P49753 483 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 LIG4P49917 911 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 PPP2R5DQ14738 602 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 SLC39A14Q15043 492 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 PTPAQ15257 358 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 FOXD4L6Q3SYB3 417 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 MGAT5BQ3V5L5 792 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 FOXD4L3Q6VB84 417 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 RALGPS2Q86X27 583 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 ZSWIM2Q8NEG5 633 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 FAM200AQ8TCP9 573 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 BPIFB1Q8TDL5 484 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 FIZ1Q96SL8 496 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 RAB34Q9BZG1 259 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 GPR88Q9GZN0 384 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 ZCWPW1Q9H0M4 648 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 EBF3Q9H4W6 596 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 C8orf33Q9H7E9 229 aaPredicted RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 RPF1Q9H9Y2 349 aaKnown RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 CPSF3Q9UKF6 684 aaKnown RBP13.96□□□□□ -0.17
LINC00339-202ENST00000416769 RCOR1Q9UKL0 485 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 TBX20Q9UMR3 447 aa13.96□□□□□ -0.17
LINC00339-202ENST00000416769 CHD6Q8TD26 2715 aa13.96□□□□□ -0.18
LINC00339-202ENST00000416769 ABCA7Q8IZY2 2146 aa13.96□□□□□ -0.18
LINC00339-202ENST00000416769 MYO16Q9Y6X6 1858 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 A0A0B4J269 797 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 PIRO00625 290 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 DPYSL4O14531 572 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 OGTO15294 1046 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 HCRTO43612 131 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 YEATS4O95619 227 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 EGFP01133 1207 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 ADRB2P07550 413 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 SMTNP53814 917 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 MLLT6P55198 1093 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-202ENST00000416769 MYBPC2Q14324 1141 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 MCM6Q14566 821 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 ARHGAP29Q52LW3 1261 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 ZC2HC1CQ53FD0 456 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-202ENST00000416769 N4BP2L1Q5TBK1 243 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-202ENST00000416769 WSCD1Q658N2 575 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 CLEC17AQ6ZS10 378 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 WDR5BQ86VZ2 330 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 GPBP1Q86WP2 473 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 EFCAB13Q8IY85 973 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 LINC00301Q8NCQ3 95 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 EZH1Q92800 747 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-202ENST00000416769 E2F7Q96AV8 911 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 MSTO1Q9BUK6 570 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 TIPINQ9BVW5 301 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 SCAND2PQ9GZW5 306 aaPredicted RBP13.95□□□□□ -0.18
LINC00339-202ENST00000416769 TASP1Q9H6P5 420 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 GKN1Q9NS71 199 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 BLOC1S4Q9NUP1 217 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 CEP295Q9C0D2 2601 aa13.95□□□□□ -0.18
LINC00339-202ENST00000416769 ANO9A1A5B4 782 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 DCLK1O15075 740 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 LRP3O75074 770 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 TADA3O75528 432 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 PIGRP01833 764 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 ODC1P11926 461 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 HMGA1P17096 107 aaKnown RBP13.94□□□□□ -0.18
LINC00339-202ENST00000416769 CEBPZQ03701 1054 aaKnown RBP13.94□□□□□ -0.18
LINC00339-202ENST00000416769 STK38Q15208 465 aa13.94□□□□□ -0.18
LINC00339-202ENST00000416769 DGKKQ5KSL6 1271 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms