RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 LRRC52Q8N7C0 313 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 RSPH1Q8WYR4 309 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 TRIB2Q92519 343 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ZWILCHQ9H900 591 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ANLNQ9NQW6 1124 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 A0A1B0GUL6 1792 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PODXLO00592 558 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 GJB1P08034 283 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 CYP11B1P15538 503 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PDGFRAP16234 1089 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PURAQ00577 322 aaKnown RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 E4F1Q66K89 784 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ACAD10Q6JQN1 1059 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 GJB7Q6PEY0 223 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PPP1R21Q6ZMI0 780 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 UNC93AQ86WB7 457 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 CRYGNQ8WXF5 182 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 CYFIP2Q96F07 1278 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 SEPT5Q99719 369 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PADI3Q9ULW8 664 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 MAGED2Q9UNF1 606 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 AP1G2O75843 785 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ZFXP17010 805 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 RGS7P49802 495 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ZACNQ401N2 412 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 PPP6R3Q5H9R7 873 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 FBXO46Q6PJ61 603 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 ACOT1Q86TX2 421 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 SPATS2Q86XZ4 545 aaKnown RBP8.98□□□□□ -0.97
SYNE1-211ENST00000413186 CCNYQ8ND76 341 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 CPA5Q8WXQ8 436 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 BSNDQ8WZ55 320 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 SYT15Q9BQS2 421 aa8.98□□□□□ -0.97
SYNE1-211ENST00000413186 TISP43B9A030 160 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 B4GALT5O43286 388 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 B4GALT4O60513 344 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 FBXO21O94952 628 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ATF2P15336 505 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 SCNN1GP51170 649 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 BASP1P80723 227 aaKnown RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 PPIGQ13427 754 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ATRIPQ8WXE1 791 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ZNF512Q96ME7 567 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ZNF558Q96NG5 402 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 FZD8Q9H461 694 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 TMEM51Q9NW97 253 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ABI2Q9NYB9 513 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 AIPL1Q9NZN9 384 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 LSM7Q9UK45 103 aaKnown RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 FBXL5Q9UKA1 691 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 DYTNA2CJ06 578 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 GRID2IPA4D2P6 1211 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 H3BRJ5 948 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ADRB2P07550 413 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 CCND3P30281 292 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 PPM1AP35813 382 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 MLH1P40692 756 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 TDRD10Q5VZ19 366 aaKnown RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 EMBQ6PCB8 327 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 USP6NLQ92738 828 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 LRG1P02750 347 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 KRT10P13645 584 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 BLVRAP53004 296 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 MBTD1Q05BQ5 628 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 TMC7Q7Z402 723 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ADAT2Q7Z6V5 191 aaKnown RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 SLC30A5Q8TAD4 765 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 PPP1R13LQ8WUF5 828 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.97□□□□□ -0.971e-6■■■■■ 56.2
SYNE1-211ENST00000413186 HSPH1Q92598 858 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 NAGPAQ9UK23 515 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 LRRC37AA6NMS7 1700 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ECEL1O95672 775 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 PPP3CAQ08209 521 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 ITKQ08881 620 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 LGSNQ5TDP6 509 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 NYAP1Q6ZVC0 841 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 EPM2AIP1Q7L775 607 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 EPAS1Q99814 870 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 C11orf49Q9H6J7 331 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 KCND1Q9NSA2 647 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 DDX43Q9NXZ2 648 aaKnown RBP8.97□□□□□ -0.97
SYNE1-211ENST00000413186 IPPQ9Y573 584 aa8.97□□□□□ -0.97
SYNE1-211ENST00000413186 RBM47A0AV96 593 aaKnown RBP8.96□□□□□ -0.97
SYNE1-211ENST00000413186 SGK1O00141 431 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 TSPAN1O60635 241 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 ALS2CLQ60I27 953 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 RWDD4Q6NW29 188 aaKnown RBP8.96□□□□□ -0.97
SYNE1-211ENST00000413186 DARS2Q6PI48 645 aaKnown RBP8.96□□□□□ -0.97
SYNE1-211ENST00000413186 TATDN2Q93075 761 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 SENP8Q96LD8 212 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 PARD6BQ9BYG5 372 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 NFKBIZQ9BYH8 718 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 NKIRAS1Q9NYS0 192 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 MRFAP1Q9Y605 127 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 NRXN2Q9P2S2 1712 aa8.96□□□□□ -0.97
SYNE1-211ENST00000413186 RGS20O76081 388 aa8.96□□□□□ -0.98
SYNE1-211ENST00000413186 ZBED1O96006 694 aa8.96□□□□□ -0.98
SYNE1-211ENST00000413186 ZNF865P0CJ78 1059 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-211ENST00000413186 NFKBIAP25963 317 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms