RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 DNAJC21Q5F1R6 531 aaKnown RBP21.29■■□□□ 1
USP39-204ENST00000409766 LRRC38Q5VT99 294 aa21.29■■□□□ 1
USP39-204ENST00000409766 NT5DC4Q86YG4 428 aa21.29■■□□□ 1
USP39-204ENST00000409766 NIPA2Q8N8Q9 360 aa21.29■■□□□ 1
USP39-204ENST00000409766 TMEM176AQ96HP8 235 aa21.29■■□□□ 1
USP39-204ENST00000409766 CAPS2Q9BXY5 557 aa21.29■■□□□ 1
USP39-204ENST00000409766 PABPC3Q9H361 631 aaKnown RBP21.29■■□□□ 1
USP39-204ENST00000409766 MTRF1LQ9UGC7 380 aaKnown RBP21.29■■□□□ 1
USP39-204ENST00000409766 F2P00734 622 aa21.29■■□□□ 1
USP39-204ENST00000409766 P4HA1P13674 534 aa21.29■■□□□ 1
USP39-204ENST00000409766 HOXA11P31270 313 aaPredicted RBP21.29■■□□□ 1
USP39-204ENST00000409766 GJC1P36383 396 aa21.29■■□□□ 1
USP39-204ENST00000409766 IRF5Q13568 498 aa21.29■■□□□ 1
USP39-204ENST00000409766 ATP13A4Q4VNC1 1196 aa21.29■■□□□ 1
USP39-204ENST00000409766 LRRC31Q6UY01 552 aa21.29■■□□□ 1
USP39-204ENST00000409766 KDM7AQ6ZMT4 941 aa21.29■■□□□ 1
USP39-204ENST00000409766 RUFY4Q6ZNE9 571 aa21.29■■□□□ 1
USP39-204ENST00000409766 SYDE1Q6ZW31 735 aaPredicted RBP21.29■■□□□ 1
USP39-204ENST00000409766 DPP3Q9NY33 737 aa21.29■■□□□ 1
USP39-204ENST00000409766 NRCAMQ92823 1304 aa21.28■■□□□ 1
USP39-204ENST00000409766 TP73O15350 636 aa21.28■■□□□ 1
USP39-204ENST00000409766 GPR32O75388 356 aa21.28■■□□□ 1
USP39-204ENST00000409766 STAU1O95793 577 aaKnown RBP21.28■■□□□ 1
USP39-204ENST00000409766 IRAK1P51617 712 aa21.28■■□□□ 1
USP39-204ENST00000409766 HNRNPH2P55795 449 aaKnown RBP21.28■■□□□ 1
USP39-204ENST00000409766 NFX1Q12986 1120 aaKnown RBP21.28■■□□□ 1
USP39-204ENST00000409766 MAP2K5Q13163 448 aa21.28■■□□□ 1
USP39-204ENST00000409766 CCNG2Q16589 344 aa21.28■■□□□ 1
USP39-204ENST00000409766 DCAF4L1Q3SXM0 396 aa21.28■■□□□ 1
USP39-204ENST00000409766 RCOR2Q8IZ40 523 aa21.28■■□□□ 1
USP39-204ENST00000409766 GRK7Q8WTQ7 553 aa21.28■■□□□ 1
USP39-204ENST00000409766 KAT2BQ92831 832 aa21.28■■□□□ 1
USP39-204ENST00000409766 FEZ2Q9UHY8 353 aaPredicted RBP21.28■■□□□ 1
USP39-204ENST00000409766 SMIM10L2AP0DMW4 78 aa21.28■■□□□ 1
USP39-204ENST00000409766 SMIM10L2BP0DMW5 78 aa21.28■■□□□ 1
USP39-204ENST00000409766 NR1D1P20393 614 aa21.28■■□□□ 1
USP39-204ENST00000409766 RBP5P82980 135 aa21.28■■□□□ 1
USP39-204ENST00000409766 TMEM62Q0P6H9 643 aa21.28■■□□□ 1
USP39-204ENST00000409766 PTK6Q13882 451 aa21.28■■□□□ 1
USP39-204ENST00000409766 ATL2Q8NHH9 583 aa21.28■■□□□ 1
USP39-204ENST00000409766 RNF25Q96BH1 459 aaPredicted RBP21.28■■□□□ 1
USP39-204ENST00000409766 FAM49AQ9H0Q0 323 aaPredicted RBP21.28■■□□□ 1
USP39-204ENST00000409766 NMRK2Q9NPI5 230 aa21.28■■□□□ 1
USP39-204ENST00000409766 FLRT1Q9NZU1 646 aa21.28■■□□□ 1
USP39-204ENST00000409766 WHRNQ9P202 907 aa21.28■■□□□ 1
USP39-204ENST00000409766 TJP2Q9UDY2 1190 aa21.28■■□□□ 1
USP39-204ENST00000409766 MBLAC1A4D2B0 266 aaPredicted RBP21.27■■□□□ 1
USP39-204ENST00000409766 SIGLEC16A6NMB1 481 aa21.27■■□□□ 1
USP39-204ENST00000409766 NUDT17P0C025 328 aa21.27■■□□□ 1
USP39-204ENST00000409766 EIF3BP55884 814 aaKnown RBP21.27■■□□□ 1
USP39-204ENST00000409766 GSCP56915 257 aaPredicted RBP21.27■■□□□ 1
USP39-204ENST00000409766 CDC42EP1Q00587 391 aa21.27■■□□□ 1
USP39-204ENST00000409766 INCA1Q0VD86 236 aa21.27■■□□□ 1
USP39-204ENST00000409766 RBM41Q96IZ5 413 aaKnown RBP21.27■■□□□ 1
USP39-204ENST00000409766 SLITRK1Q96PX8 696 aa21.27■■□□□ 1
USP39-204ENST00000409766 CPXM1Q96SM3 734 aa21.27■■□□□ 1
USP39-204ENST00000409766 GCOM2Q9BZD3 368 aaPredicted RBP21.27■■□□□ 1
USP39-204ENST00000409766 CDHR5Q9HBB8 845 aa21.27■■□□□ 1
USP39-204ENST00000409766 KLHL11Q9NVR0 708 aa21.27■■□□□ 1
USP39-204ENST00000409766 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.27■■□□□ 1
USP39-204ENST00000409766 RALGAPA2Q2PPJ7 1873 aa21.27■□□□□ 0.99
USP39-204ENST00000409766 IGF2BP3O00425 579 aaKnown RBP eCLIP21.26■□□□□ 0.99
USP39-204ENST00000409766 ECM2O94769 699 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 IVDP26440 423 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 RFC1P35251 1148 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 CALCOCO2Q13137 446 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 KIF12Q96FN5 646 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 CENPHQ9H3R5 247 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 FAM124BQ9H5Z6 455 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 GINS2Q9Y248 185 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 NEU2Q9Y3R4 380 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 A6NNZ2 444 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 MICAL2O94851 1124 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 NPTXRO95502 500 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 ITGBL1O95965 494 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 GAS8O95995 478 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 ZNF865P0CJ78 1059 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 KRT3P12035 628 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 CETN2P41208 172 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 TUBB8Q3ZCM7 444 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 OLFML2BQ68BL8 750 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 TXNRD3NBQ6F5E7 133 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 PKNOX2Q96KN3 472 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 CXCL16Q9H2A7 254 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 PLEKHA5Q9HAU0 1116 aa21.26■□□□□ 0.99
USP39-204ENST00000409766 BARX2Q9UMQ3 279 aaPredicted RBP21.26■□□□□ 0.99
USP39-204ENST00000409766 GRIN2DO15399 1336 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 SMIM35A0A1B0GVV1 85 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 PI4K2BG5E9Z4 385 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 GOLGA8SH3BPF8 625 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 HMGCRP04035 888 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 VDRP11473 427 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 ITIH2P19823 946 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 ATP1A2P50993 1020 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 HUNKP57058 714 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 PSMC1P62191 440 aaKnown RBP21.25■□□□□ 0.99
USP39-204ENST00000409766 ADCY2Q08462 1091 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 SLMAPQ14BN4 828 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 CNGA2Q16280 664 aa21.25■□□□□ 0.99
USP39-204ENST00000409766 AGBL2Q5U5Z8 902 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms