RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 PPFIBP1Q86W92 1011 aa31.34■■■□□ 2.61
USP42-202ENST00000404008 CISHQ9NSE2 258 aa31.34■■■□□ 2.61
USP42-202ENST00000404008 WDR27A2RRH5 827 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 TEX33O43247 280 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 OR4Q2P0C623 313 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 CD58P19256 250 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 ARPP19P56211 112 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 PALB2Q86YC2 1186 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 SLC22A17Q8WUG5 538 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 KAT5Q92993 513 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 ERGIC2Q96RQ1 377 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 UBE2TQ9NPD8 197 aaPredicted RBP31.33■■■□□ 2.61
USP42-202ENST00000404008 HMGXB4Q9UGU5 601 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 CDH9Q9ULB4 789 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 BARX2Q9UMQ3 279 aaPredicted RBP31.33■■■□□ 2.61
USP42-202ENST00000404008 SIK3Q9Y2K2 1263 aa31.33■■■□□ 2.61
USP42-202ENST00000404008 FSD2A1L4K1 749 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 A8MXQ7 604 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 C1RP00736 705 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 PDGFRBP09619 1106 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 CPB1P15086 417 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 TSPY1Q01534 308 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 NR1I3Q14994 352 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 SYCP1Q15431 976 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 INTS6LQ5JSJ4 861 aaKnown RBP31.32■■■□□ 2.6
USP42-202ENST00000404008 GJB7Q6PEY0 223 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 LILRA6Q6PI73 481 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 UNC93AQ86WB7 457 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 TTC39CQ8N584 583 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 UBR7Q8N806 425 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 KREMEN1Q96MU8 473 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 LSM14BQ9BX40 385 aaKnown RBP31.32■■■□□ 2.6
USP42-202ENST00000404008 IGFLR1Q9H665 355 aa31.32■■■□□ 2.6
USP42-202ENST00000404008 TGM5O43548 720 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 CILPO75339 1184 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 ABLIM3O94929 683 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 KLK7P49862 253 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 NDST1P52848 882 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 GPR17Q13304 367 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 KCNC3Q14003 757 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 LRRTM3Q86VH5 581 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 EFHBQ8N7U6 833 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 ZNF461Q8TAF7 563 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 PKMYT1Q99640 499 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 SYT15Q9BQS2 421 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 DPEP3Q9H4B8 488 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 PLCB1Q9NQ66 1216 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 HCFC2Q9Y5Z7 792 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 XIRP2A4UGR9 3374 aa31.31■■■□□ 2.6
USP42-202ENST00000404008 GLUD1P00367 558 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 UBASH3AP57075 661 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 PSMC1P62191 440 aaKnown RBP31.3■■■□□ 2.6
USP42-202ENST00000404008 YWHAEP62258 255 aaKnown RBP31.3■■■□□ 2.6
USP42-202ENST00000404008 ENOSF1Q7L5Y1 443 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 VN1R2Q8NFZ6 395 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 JAKMIP2Q96AA8 810 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 FAM81BQ96LP2 452 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 ATP2C2O75185 946 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 EPCAMP16422 314 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 ACO1P21399 889 aaKnown RBP31.3■■■□□ 2.6
USP42-202ENST00000404008 SLC39A12Q504Y0 691 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 KLHDC7AQ5VTJ3 777 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 TPGS2Q68CL5 300 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 RNF19BQ6ZMZ0 732 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 DCP1BQ8IZD4 617 aaKnown RBP31.3■■■□□ 2.6
USP42-202ENST00000404008 WHAMMQ8TF30 809 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 TWNKQ96RR1 684 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 CRTAC1Q9NQ79 661 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 IFNKQ9P0W0 207 aa31.3■■■□□ 2.6
USP42-202ENST00000404008 MFAP3P55082 362 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 RBM10P98175 930 aaKnown RBP31.29■■■□□ 2.6
USP42-202ENST00000404008 COL19A1Q14993 1142 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 LLGL2Q6P1M3 1020 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 FAM171BQ6P995 826 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 B3GALNT2Q8NCR0 500 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 TMLHEQ9NVH6 421 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 AJAP1Q9UKB5 411 aaPredicted RBP31.29■■■□□ 2.6
USP42-202ENST00000404008 PTPRDP23468 1912 aa31.29■■■□□ 2.6
USP42-202ENST00000404008 MYBPHLA2RUH7 354 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 LINC01565O15544 149 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 NOL4O94818 638 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 VNN2O95498 520 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 GLP2RO95838 553 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 SPATA31D3P0C874 917 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 ATF2P15336 505 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 ORC1Q13415 861 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 CCDC85BQ15834 202 aaPredicted RBP31.28■■■□□ 2.6
USP42-202ENST00000404008 CCDC142Q17RM4 750 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 SPATA31D4Q6ZUB0 917 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 TNIP3Q96KP6 325 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 PGLYRP2Q96PD5 576 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 NT5C1AQ9BXI3 368 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 GANQ9H2C0 597 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 FAM207AQ9NSI2 230 aaPredicted RBP31.28■■■□□ 2.6
USP42-202ENST00000404008 AFF4Q9UHB7 1163 aaKnown RBP31.28■■■□□ 2.6
USP42-202ENST00000404008 FBXW11Q9UKB1 542 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 DNAJC12Q9UKB3 198 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 GTF3C4Q9UKN8 822 aa31.28■■■□□ 2.6
USP42-202ENST00000404008 PRUNE2Q8WUY3 3088 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 NCK2O43639 380 aa31.27■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms