RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 XPO7Q9UIA9 1087 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ZNF232Q9UNY5 417 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 RPS6KL1Q9Y6S9 549 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 KIF20BQ96Q89 1820 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ARHGEF28Q8N1W1 1705 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PNMA6FA0A0J9YX94 578 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 AKAP10O43572 662 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 GNAZP19086 355 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ITGADQ13349 1161 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 NCOA4Q13772 614 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ZCCHC23Q6ZST2 131 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ACAD11Q709F0 780 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ADGRA1Q86SQ6 560 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 CROCCP3Q8IVE0 287 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 EXOC8Q8IYI6 725 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 CYGBQ8WWM9 190 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ZNF512BQ96KM6 892 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 COPS7BQ9H9Q2 264 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 CCPG1Q9ULG6 757 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 INPP5FQ9Y2H2 1132 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 HBS1LQ9Y450 684 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ZBTB39O15060 712 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 CSF1RP07333 972 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 HMOX2P30519 316 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ALDH1A3P47895 512 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 MRPS22P82650 360 aaKnown RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PLOD1Q02809 727 aaPredicted RBP9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ITGA9Q13797 1035 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ADRM1Q16186 407 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PTF1AQ7RTS3 328 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 JADE3Q92613 823 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 SLC35C1Q96A29 364 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ATXN7L3BQ96GX2 97 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM79Q9BSE2 394 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 RUSC1Q9BVN2 902 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PLGRKTQ9HBL7 147 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 ACP6Q9NPH0 428 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PTTG2Q9NZH5 202 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 GTF3C4Q9UKN8 822 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 IVNS1ABPQ9Y6Y0 642 aa9.74□□□□□ -0.85
COL28A1-201ENST00000399429 PALM3A6NDB9 673 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 A2ML1A8K2U0 1454 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TPST1O60507 370 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 POLR2MP0CAP2 368 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 VCAM1P19320 739 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SERPINB5P36952 375 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PRKCIP41743 596 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SLC1A1P43005 524 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TRPC1P48995 793 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 AQP4P55087 323 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ZYXQ15942 572 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 C6orf183Q5T699 404 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SETDB2Q96T68 719 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SH2D3AQ9BRG2 576 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM121Q9BTD3 319 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TRNAU1APQ9NX07 287 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 MAD2L2Q9UI95 211 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ITGB1BP2Q9UKP3 347 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ACTL7BQ9Y614 415 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 BOLA2-SMG1P6H3BVE0 249 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TM9SF1O15321 606 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DDX3YO15523 660 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 MAP3K13O43283 966 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CBFA2T3O75081 653 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ZMPSTE24O75844 475 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PEX2P28328 305 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 IL1RL1Q01638 556 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CENPCQ03188 943 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ORC2Q13416 577 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 EPHA7Q15375 998 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM270Q6UE05 265 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 HEATR4Q86WZ0 1026 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 C4orf32Q8N8J7 132 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 USP13Q92995 863 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TNFRSF25Q93038 417 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 RBM17Q96I25 401 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 NACC1Q96RE7 527 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM109Q9BVC6 243 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DCLK3Q9C098 648 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TMEM206Q9H813 350 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 C10orf88Q9H8K7 445 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SLC24A2Q9UI40 661 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DAPK2Q9UIK4 370 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DNAJC16Q9Y2G8 782 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TRIM17Q9Y577 477 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 HEY1Q9Y5J3 304 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SNX13Q9Y5W8 968 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ABCC6O95255 1503 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ZSCAN9O15535 394 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SNRPAP09012 282 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SOX11P35716 441 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 HPCAP84074 193 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 MPP2Q14168 576 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PRPSAP1Q14558 356 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 INAQ16352 499 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CEP55Q53EZ4 464 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 XKR9Q5GH70 373 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 LRRC8EQ6NSJ5 796 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 FBXO11Q86XK2 927 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms