RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SPATA33Q96N06 139 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 DRC3Q9H069 523 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 KCND1Q9NSA2 647 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 GAKO14976 1311 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 ROBO3Q96MS0 1386 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 M0R2N6 131 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 DDX3XO00571 662 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 APOL1O14791 398 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 DGKIO75912 1065 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 RPS6P62753 249 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 PRAMEP78395 509 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 PRKCEQ02156 737 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 BTKQ06187 659 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 FAM167AQ96KS9 214 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 TAAR1Q96RJ0 339 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 AP5M1Q9H0R1 490 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SARS2Q9NP81 518 aaKnown RBP11.28□□□□□ -0.6
CCDC40-204ENST00000397545 SCN7AQ01118 1682 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 A0A1B0GUL6 1792 aa11.28□□□□□ -0.6
CCDC40-204ENST00000397545 MGEA5O60502 916 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 SYF2O95926 243 aaKnown RBP11.27□□□□□ -0.6
CCDC40-204ENST00000397545 SETSIPP0DME0 302 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 ATXN8OSP0DMR3 200 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 CYP11B1P15538 503 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 EEF1DP29692 281 aaKnown RBP11.27□□□□□ -0.6
CCDC40-204ENST00000397545 SOX10P56693 466 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 ACAD10Q6JQN1 1059 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 SAMD7Q7Z3H4 446 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 GALNT4Q8N4A0 578 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 SERPINB12Q96P63 405 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 PDGFDQ9GZP0 370 aaPredicted RBP11.27□□□□□ -0.6
CCDC40-204ENST00000397545 PPME1Q9Y570 386 aa11.27□□□□□ -0.6
CCDC40-204ENST00000397545 GOLGA4Q13439 2230 aaKnown RBP11.27□□□□□ -0.6
CCDC40-204ENST00000397545 KLRC4O43908 158 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 SHMT1P34896 483 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 MED21Q13503 144 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 AADACL2Q6P093 401 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 SLC30A9Q6PML9 568 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 NLRP9Q7RTR0 991 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 IFNEQ86WN2 208 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 ABI1Q8IZP0 508 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 DACT3Q96B18 629 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 TMA16Q96EY4 203 aaKnown RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 POLR3CQ9BUI4 534 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 FAM129AQ9BZQ8 928 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 MANSC1Q9H8J5 431 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 ACP6Q9NPH0 428 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 CACNB2Q08289 660 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 TRADDQ15628 312 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 MEA1Q16626 185 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 TTMPQ5BVD1 217 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 STRIP1Q5VSL9 837 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 IL31Q6EBC2 164 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 RSPH3Q86UC2 560 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 CDKL3Q8IVW4 592 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 USP33Q8TEY7 942 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 FAM163AQ96GL9 167 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-204ENST00000397545 RIT2Q99578 217 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 CCDC90BQ9GZT6 254 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 ING2Q9H160 280 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 BATF3Q9NR55 127 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 SUN2Q9UH99 717 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 SUGT1Q9Y2Z0 365 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 LAMB2P55268 1798 aa11.27□□□□□ -0.61
CCDC40-204ENST00000397545 ADCY3O60266 1144 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 S100BP04271 92 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 ZCCHC18P0CG32 403 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 CDC25CP30307 473 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 FNTAP49354 379 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 RCN1Q15293 331 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 CNGA3Q16281 694 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 ARHGEF26Q96DR7 871 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 STAMBPL1Q96FJ0 436 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TMEM121Q9BTD3 319 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 STAP1Q9ULZ2 295 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 AURKCQ9UQB9 309 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TMEM150BA6NC51 233 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 DDTLA6NHG4 134 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TAC1P20366 129 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 CTCFP49711 727 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 CHI3L2Q15782 390 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 HHIPL2Q6UWX4 724 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 ZNF720Q7Z2F6 126 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 IRF2BP1Q8IU81 584 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 OTUD5Q96G74 571 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 RIOX1Q9H6W3 641 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TRIM33Q9UPN9 1127 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 E2F6O75461 281 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 SUPT3HO75486 399 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 PYGMP11217 842 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 PIGHQ14442 188 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 EMC2Q15006 297 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 APOBEC3HQ6NTF7 200 aaKnown RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TMC3Q7Z5M5 1100 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 PRPF39Q86UA1 669 aaKnown RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 SLC35C1Q96A29 364 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 METTL5Q9NRN9 209 aaKnown RBP11.26□□□□□ -0.61
CCDC40-204ENST00000397545 AIPL1Q9NZN9 384 aa11.26□□□□□ -0.61
CCDC40-204ENST00000397545 TBX20Q9UMR3 447 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms