RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MRNIPQ6NTE8 343 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PLD3Q8IV08 490 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 CARNMT1Q8N4J0 409 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ARMC2Q8NEN0 867 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TGS1Q96RS0 853 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 SENP7Q9BQF6 1050 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 IGFLR1Q9H665 355 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 EXO5Q9H790 373 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 GALNT8Q9NY28 637 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PYCARDQ9ULZ3 195 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 NCKAP1Q9Y2A7 1128 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ABCC2Q92887 1545 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 FLT1P17948 1338 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 AP1G2O75843 785 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 RPLP2P05387 115 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 POLBP06746 335 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 RCAN1P53805 252 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PIGHQ14442 188 aaPredicted RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 EZH2Q15910 746 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 CLEC16AQ2KHT3 1053 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ZNF280DQ6N043 979 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ZNF579Q8NAF0 562 aaKnown RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 RNF208Q9H0X6 261 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 ETNK1Q9HBU6 452 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 PRR12Q9ULL5 1215 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 TRIM17Q9Y577 477 aa7.5□□□□□ -1.21
UPF2-203ENST00000397053 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.5□□□□□ -1.21
UPF2-203ENST00000397053 PLEKHG1Q9ULL1 1385 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ANO9A1A5B4 782 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 EIF4E1BA6NMX2 242 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 PP2D1A8MPX8 630 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 RTN2O75298 545 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 DEAF1O75398 565 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 VPS26AO75436 327 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ANXA9O76027 345 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ALDH2P05091 517 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SERPINB9P50453 376 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 OXCT1P55809 520 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 KCNK10P57789 538 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SNRNP35Q16560 246 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 NFE2Q16621 373 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 GLRA4Q5JXX5 417 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 BTNL9Q6UXG8 535 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ERO1BQ86YB8 467 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MICU2Q8IYU8 434 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SLC30A5Q8TAD4 765 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ZNF669Q96BR6 464 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 ARHGEF26Q96DR7 871 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CAMKK2Q96RR4 588 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 GOLPH3LQ9H4A5 285 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MRGBPQ9NV56 204 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MTMR4Q9NYA4 1195 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 NYAP2Q9P242 653 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 DYRK1BQ9Y463 629 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 NEDD4P46934 1319 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 TBC1D4O60343 1298 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 WEE2P0C1S8 567 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MYL2P10916 166 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CLK1P49759 484 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 RHOAP61586 193 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 VSNL1P62760 191 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 BTKQ06187 659 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ZNF543Q08ER8 600 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 STX3Q13277 289 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 TOMM20Q15388 145 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CYTH1Q15438 398 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 FRMD5Q7Z6J6 570 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ITIH5Q86UX2 942 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CPA5Q8WXQ8 436 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MCEEQ96PE7 176 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 C17orf80Q9BSJ5 609 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 TARS2Q9BW92 718 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 UBXN6Q9BZV1 441 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 WDCPQ9H6R7 721 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 URB1O60287 2271 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 CPDO75976 1380 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CYTH3O43739 400 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CHGBP05060 677 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CYP2C8P10632 490 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 RESTQ13127 1097 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 HIC1Q14526 733 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 STAT4Q14765 748 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 LRRC14Q15048 493 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SLFNL1Q499Z3 407 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 PLA2G4FQ68DD2 849 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 OXER1Q8TDS5 423 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 NIF3L1Q9GZT8 377 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 KRCC1Q9NPI7 259 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 STK36Q9NRP7 1315 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 NUDT14O95848 222 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 RBP3P10745 1247 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SERPINB3P29508 390 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 THOP1P52888 689 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 SKP1P63208 163 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 PREPLQ4J6C6 727 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 AASDHQ4L235 1098 aaPredicted RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 C12orf60Q5U649 245 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 RESP18Q5W5W9 173 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ICE2Q659A1 982 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 PRR23CQ6ZRP0 262 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms