RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GANCQ8TET4 914 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 CCT7Q99832 543 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 C20orf96Q9NUD7 363 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 DMC1Q14565 340 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 UBE2Q1Q7Z7E8 422 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 SP8Q8IXZ3 490 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 SCFD2Q8WU76 684 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 PPP1R36Q96LQ0 422 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 E7ENQ6 273 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 STRNO43815 780 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 ERVK-24P63145 666 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 PDK1Q15118 436 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 WLSQ5T9L3 541 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 FEZF2Q8TBJ5 459 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 KLF6Q99612 283 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 NDUFA13Q9P0J0 144 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 NAGPAQ9UK23 515 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 FLT1P17948 1338 aa10.7□□□□□ -0.7
LIMCH1-203ENST00000396595 NDUFB10O96000 172 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 DNAJC3Q13217 504 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 KPNB1Q14974 876 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 MDM1Q8TC05 714 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 RIT2Q99578 217 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 LBHD1Q9BQE6 289 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 ZSWIM1Q9BR11 485 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SFMBT1Q9UHJ3 866 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 MAGEA13PA6NCF6 341 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PCP4L1A6NKN8 68 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 TRIM25Q14258 630 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PAPD7Q5XG87 772 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 RBM43Q6ZSC3 357 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 EFL1Q7Z2Z2 1120 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 APOBEC3FQ8IUX4 373 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 NUP93Q8N1F7 819 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 MCRS1Q96EZ8 462 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 ELMO2Q96JJ3 720 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 RPAP3Q9H6T3 665 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 EPB41L4AQ9HCS5 686 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 AFF4Q9UHB7 1163 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CLTCL1P53675 1640 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CROCC2H7BZ55 1655 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 ASB14A6NK59 587 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 NQO1P15559 274 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SFSWAPQ12872 951 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SH3BP5LQ7L8J4 393 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SUGP1Q8IWZ8 645 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 AHI1Q8N157 1196 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CYGBQ8WWM9 190 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 DAGLAQ9Y4D2 1042 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 MTSS1O43312 755 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CSF1RP07333 972 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 RGS7P49802 495 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 COPAP53621 1224 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 VCPP55072 806 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CDC42EP1Q00587 391 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 CHI3L2Q15782 390 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 COBLL1Q53SF7 1204 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SYCP2LQ5T4T6 812 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 GALNT4Q8N4A0 578 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 ATPAF2Q8N5M1 289 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 EFHBQ8N7U6 833 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 MMP19Q99542 508 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 TJP2Q9UDY2 1190 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 HPS5Q9UPZ3 1129 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 FARP1Q9Y4F1 1045 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 SNX9Q9Y5X1 595 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 NCOA3Q9Y6Q9 1424 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 UBTFL6P0CB48 400 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PDHBP11177 359 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 TMEM132DQ14C87 1099 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PTPAQ15257 358 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 C16orf86Q6ZW13 317 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 ARID3BQ8IVW6 561 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 DAGLBQ8NCG7 672 aa10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 PAPOLBQ9NRJ5 636 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-203ENST00000396595 M0R3G1 203 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 DNALI1O14645 258 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ZC2HC1CQ53FD0 456 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 IFNEQ86WN2 208 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 LPAR1Q92633 364 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 PRPF18Q99633 342 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 FRMD8P1Q9BZ68 369 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 TMBIM4Q9HC24 238 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 IL1RAPL1Q9NZN1 696 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 FAM32AQ9Y421 112 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 NFIBO00712 420 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 IL18RAPO95256 599 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 APOA4P06727 396 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 TJAP1Q5JTD0 557 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 MFN1Q8IWA4 741 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 C17orf50Q8WW18 174 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 DDX50Q9BQ39 737 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 NIF3L1Q9GZT8 377 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 GOLPH3Q9H4A6 298 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ZSCAN32Q9NX65 697 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 A0A087X0T9 212 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 TRIM49D1C9J1S8 452 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 O00370 1275 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 EEF2KO00418 725 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms