RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MMRN2Q9H8L6 949 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 NXF1Q9UBU9 619 aaKnown RBP23.26■■□□□ 1.31
CLN3-207ENST00000395653 USTQ9Y2C2 406 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 NR2E1Q9Y466 385 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 NCOR1O75376 2440 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 GNA14O95837 355 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 MXI1P50539 228 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 NLRP12P59046 1061 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 DCAF17Q5H9S7 520 aaPredicted RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 INTS6LQ5JSJ4 861 aaKnown RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 TCERG1LQ5VWI1 586 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 LRRTM3Q86VH5 581 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 TAS1R2Q8TE23 839 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 RPGRIP1Q96KN7 1286 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 IMPG2Q9BZV3 1241 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 CRISPLD1Q9H336 500 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 DACH1Q9UI36 760 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 YIPF1Q9Y548 306 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 CUL9Q8IWT3 2517 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 CLSTN1O94985 981 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 FGFR1OPO95684 399 aaKnown RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 P4HA1P13674 534 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 SSTR3P32745 418 aaPredicted RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 DUSP4Q13115 394 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 NFE2Q16621 373 aaPredicted RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 DPCR1Q3MIW9 517 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 CCDC40Q4G0X9 1142 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 ATAD1Q8NBU5 361 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 SPPL2BQ8TCT7 592 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 SLC35C1Q96A29 364 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 MRPL45Q9BRJ2 306 aaKnown RBP23.25■■□□□ 1.31
CLN3-207ENST00000395653 CD320Q9NPF0 282 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 POLIQ9UNA4 740 aa23.25■■□□□ 1.31
CLN3-207ENST00000395653 MUC3AQ02505 3323 aa23.24■■□□□ 1.31
CLN3-207ENST00000395653 ACAT1P24752 427 aaKnown RBP23.24■■□□□ 1.31
CLN3-207ENST00000395653 MARSP56192 900 aaKnown RBP23.24■■□□□ 1.31
CLN3-207ENST00000395653 PLD1Q13393 1074 aa23.24■■□□□ 1.31
CLN3-207ENST00000395653 GRASPQ7Z6J2 395 aaPredicted RBP23.24■■□□□ 1.31
CLN3-207ENST00000395653 PKMYT1Q99640 499 aa23.24■■□□□ 1.31
CLN3-207ENST00000395653 SRRTQ9BXP5 876 aaKnown RBP23.24■■□□□ 1.31
CLN3-207ENST00000395653 CDH9Q9ULB4 789 aa23.24■■□□□ 1.31
CLN3-207ENST00000395653 LMO2P25791 158 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 TWF1Q12792 350 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 OTOP3Q7RTS5 596 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 CCDC150Q8NCX0 1101 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 FBXL13Q8NEE6 735 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 MED15Q96RN5 788 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 SYT15Q9BQS2 421 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 SNX25Q9H3E2 840 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 DNMT3BQ9UBC3 853 aaKnown RBP23.23■■□□□ 1.31
CLN3-207ENST00000395653 PCDHB5Q9Y5E4 795 aa23.23■■□□□ 1.31
CLN3-207ENST00000395653 TNFRSF10AO00220 468 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 DLL1O00548 723 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 HCRTO43612 131 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 ERCC5P28715 1186 aaPredicted RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 GNL1P36915 607 aaPredicted RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 TUFMP49411 452 aaKnown RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 NOP14P78316 857 aaKnown RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 CT47A1Q5JQC4 288 aaPredicted RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 CCDC183Q5T5S1 534 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 SPOPLQ6IQ16 392 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 FAM171BQ6P995 826 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 ELMOD1Q8N336 334 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 TDRD5Q8NAT2 981 aaKnown RBP23.22■■□□□ 1.31
CLN3-207ENST00000395653 OR6B3Q8NGW1 331 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 ELMO3Q96BJ8 720 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 PI4K2AQ9BTU6 479 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 SMYD3Q9H7B4 428 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 TMLHEQ9NVH6 421 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 RAB20Q9NX57 234 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 SLC27A5Q9Y2P5 690 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 COQ4Q9Y3A0 265 aa23.22■■□□□ 1.31
CLN3-207ENST00000395653 C2CD4DB7Z1M9 353 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 ALDH1A3P47895 512 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 MAPRE1Q15691 268 aaKnown RBP23.21■■□□□ 1.31
CLN3-207ENST00000395653 CBWD6Q4V339 395 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 CBWD3Q5JTY5 395 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 CBWD5Q5RIA9 395 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 TRIM59Q8IWR1 403 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 ACSF2Q96CM8 615 aaPredicted RBP23.21■■□□□ 1.31
CLN3-207ENST00000395653 ABCB6Q9NP58 842 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 AVENQ9NQS1 362 aaPredicted RBP23.21■■□□□ 1.31
CLN3-207ENST00000395653 HCFC1R1Q9NWW0 138 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 ABI2Q9NYB9 513 aaPredicted RBP23.21■■□□□ 1.31
CLN3-207ENST00000395653 GTF3C4Q9UKN8 822 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 NME7Q9Y5B8 376 aa23.21■■□□□ 1.31
CLN3-207ENST00000395653 MYBPHLA2RUH7 354 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 PDGFRBP09619 1106 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 CCDC192P0DO97 292 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 PTPN2P17706 415 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 SP100P23497 879 aaPredicted RBP23.2■■□□□ 1.3
CLN3-207ENST00000395653 ASPAP45381 313 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 CDH8P55286 799 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 PABPC1LQ4VXU2 614 aaKnown RBP23.2■■□□□ 1.3
CLN3-207ENST00000395653 IQCEQ6IPM2 695 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 SCARA5Q6ZMJ2 495 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 PLCD3Q8N3E9 789 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 TTC9BQ8N6N2 239 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 SEMA4DQ92854 862 aa23.2■■□□□ 1.3
CLN3-207ENST00000395653 FUBP3Q96I24 572 aaKnown RBP eCLIP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms