RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EIF4EBP2Q13542 120 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 GRIN2CQ14957 1233 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 EXOC3L4Q17RC7 722 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF699Q32M78 642 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 CCDC40Q4G0X9 1142 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF280DQ6N043 979 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 MRPL45Q9BRJ2 306 aaKnown RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 SLC28A3Q9HAS3 691 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 CRTAC1Q9NQ79 661 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ASB3Q9Y575 518 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 USP3Q9Y6I4 520 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 LCA5LO95447 670 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 HAPLN1P10915 354 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 TNNI1P19237 187 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 PIK3CAP42336 1068 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 OR1G1P47890 313 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 TFAMQ00059 246 aaKnown RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF667Q5HYK9 610 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 KLHL10Q6JEL2 608 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 LCLAT1Q6UWP7 414 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 VSTM1Q6UX27 236 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 LUZP1Q86V48 1076 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ADGRF2Q8IZF7 708 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM130Q8N3G9 435 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 SLC30A5Q8TAD4 765 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF461Q8TAF7 563 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 SPPL2BQ8TCT7 592 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM169Q96HH4 297 aa7.5□□□□□ -1.21
LIMA1-202ENST00000394943 NUCKS1Q9H1E3 243 aaKnown RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 MAGEC2Q9UBF1 373 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 NOCTQ9UK39 431 aaKnown RBP7.5□□□□□ -1.21
LIMA1-202ENST00000394943 F8VZ95 297 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TADA2AO75478 443 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 SETSIPP0DME0 302 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 UCHL3P15374 230 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PCSK1P29120 753 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 MATR3P43243 847 aaKnown RBP eCLIP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 BRCC3P46736 316 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CETN1Q12798 172 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ASTE1Q2TB18 679 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 VPS52Q8N1B4 723 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TATDN2Q93075 761 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 NT5C1BQ96P26 610 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ZBED2Q9BTP6 218 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 EMILIN2Q9BXX0 1053 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ELOVL4Q9GZR5 314 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TRPV4Q9HBA0 871 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 MRPL17Q9NRX2 175 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CBFA2T2O43439 604 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 B3GAT3O94766 335 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CYP1A1P04798 512 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 HOXB8P17481 243 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 LTBRP36941 435 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PLA2G4AP47712 749 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 RNASELQ05823 741 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PLD1Q13393 1074 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CNGA2Q16280 664 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TMEM132AQ24JP5 1023 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PUS10Q3MIT2 529 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PRSS36Q5K4E3 855 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 IQCEQ6IPM2 695 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 BHLHA9Q7RTU4 235 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 IRF2BP2Q7Z5L9 587 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TMC8Q8IU68 726 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 LEMD2Q8NC56 503 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ZSWIM1Q9BR11 485 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 APOL6Q9BWW8 343 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 SMYD3Q9H7B4 428 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ASNSD1Q9NWL6 643 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 GCNT4Q9P109 453 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CLEC1BQ9P126 229 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 DPP7Q9UHL4 492 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PUF60Q9UHX1 559 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ZMYM5Q9UJ78 669 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CLUHO75153 1309 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TCRBV5S1A1TA0A578 114 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 WDR27A2RRH5 827 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 MTMR11A4FU01 709 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 RBAK-RBAKDNI3L0D1 243 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 LRRN2O75325 713 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 UPP2O95045 317 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 OLFM2O95897 454 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CNPP09543 421 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 DLATP10515 647 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 VDRP11473 427 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 TUBP50607 506 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 MFAP3P55082 362 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 YWHAHQ04917 246 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CBX2Q14781 532 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PSMD5Q16401 504 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 LEXMQ3ZCV2 418 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PAN2Q504Q3 1202 aaKnown RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 RNF43Q68DV7 783 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 PM20D1Q6GTS8 502 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 LRRTM3Q86VH5 581 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CASP10Q92851 521 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 ZNF707Q96C28 371 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-202ENST00000394943 CISHQ9NSE2 258 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 POLIQ9UNA4 740 aa7.49□□□□□ -1.21
LIMA1-202ENST00000394943 RNF225M0QZC1 329 aaPredicted RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms