RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 FAM47CQ5HY64 1035 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 OLFML2BQ68BL8 750 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 CAPN12Q6ZSI9 719 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 JOSD2Q8TAC2 188 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 GTF3C2Q8WUA4 911 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 DDX27Q96GQ7 796 aaKnown RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SLC5A4Q9NY91 659 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 MTRF1LQ9UGC7 380 aaKnown RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 ATP8B3O60423 1300 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 PASKQ96RG2 1323 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 TREHO43280 583 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 HCRTO43612 131 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 IL18RAPO95256 599 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SHBGP04278 402 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SMIM10L2AP0DMW4 78 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SMIM10L2BP0DMW5 78 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 ACTN2P35609 894 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 CETN2P41208 172 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SLC1A1P43005 524 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 PTGIRP43119 386 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 NDST1P52848 882 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 C1QBPQ07021 282 aaKnown RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 NFX1Q12986 1120 aaKnown RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 SLC29A2Q14542 456 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 PHF13Q86YI8 300 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 OR6B3Q8NGW1 331 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 CPXM1Q96SM3 734 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 ELOVL4Q9GZR5 314 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 IP6K2Q9UHH9 426 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 CYTH4Q9UIA0 394 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 WDR81Q562E7 1941 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 CALB1P05937 261 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 C6orf222P0C671 652 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-203ENST00000394269 MCF2P10911 925 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 HSPA6P17066 643 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 PMS2P54278 862 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 RAD23BP54727 409 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 PLEKHA7Q6IQ23 1121 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 SCYL2Q6P3W7 929 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 MFSD7Q6UXD7 560 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 RUFY4Q6ZNE9 571 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 ACOT1Q86TX2 421 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 HSPH1Q92598 858 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 MRRFQ96E11 262 aaKnown RBP11.77□□□□□ -0.52
TCOF1-203ENST00000394269 GCOM2Q9BZD3 368 aaPredicted RBP11.77□□□□□ -0.52
TCOF1-203ENST00000394269 KATNBL1Q9H079 304 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 NXF3Q9H4D5 531 aaKnown RBP11.77□□□□□ -0.52
TCOF1-203ENST00000394269 METTL5Q9NRN9 209 aaKnown RBP11.77□□□□□ -0.52
TCOF1-203ENST00000394269 PPME1Q9Y570 386 aa11.77□□□□□ -0.52
TCOF1-203ENST00000394269 FAM187AA6NFU0 413 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 DCDC2CA8MYV0 355 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 PODXLO00592 558 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 TNPO2O14787 897 aaKnown RBP11.77□□□□□ -0.53
TCOF1-203ENST00000394269 ATP11AP98196 1134 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 PTPN11Q06124 597 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF844Q08AG5 666 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 IQSEC1Q6DN90 963 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 OR6B2Q6IFH4 312 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 MSL3Q8N5Y2 521 aaKnown RBP11.77□□□□□ -0.53
TCOF1-203ENST00000394269 RAPGEF5Q92565 580 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 TMEM176AQ96HP8 235 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 GOLGA2P5Q9HBQ8 144 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 OTOFQ9HC10 1997 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 TMEM191CA6NGB0 347 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 CTSHP09668 335 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 ZSCAN5DPP0CG00 497 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 NR1D1P20393 614 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 PTP4A2Q12974 167 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 CLUL1Q15846 466 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 SYCP2LQ5T4T6 812 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 FAM102AQ5T9C2 384 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-203ENST00000394269 DENND2CQ68D51 928 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 MIS12Q9H081 205 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 AP5M1Q9H0R1 490 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 PPANQ9NQ55 473 aaKnown RBP11.77□□□□□ -0.53
TCOF1-203ENST00000394269 MORF4L1Q9UBU8 362 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 TUBGCP4Q9UGJ1 667 aa11.77□□□□□ -0.53
TCOF1-203ENST00000394269 ETS1P14921 441 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 YWHAEP62258 255 aaKnown RBP11.76□□□□□ -0.53
TCOF1-203ENST00000394269 RBP5P82980 135 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ADCY1Q08828 1119 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 SLC4A11Q8NBS3 891 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 RNF169Q8NCN4 708 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ZMAT2Q96NC0 199 aaKnown RBP11.76□□□□□ -0.53
TCOF1-203ENST00000394269 CALN1Q9BXU9 219 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 CACNG4Q9UBN1 327 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 A0A1B0GUA9 196 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 FSCN2O14926 492 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 MED7O43513 233 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 MICAL2O94851 1124 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 GAS8O95995 478 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 P4HA1P13674 534 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ZNF132P52740 706 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 MAGOHP61326 146 aaKnown RBP11.76□□□□□ -0.53
TCOF1-203ENST00000394269 SIX1Q15475 284 aaPredicted RBP11.76□□□□□ -0.53
TCOF1-203ENST00000394269 CCDC38Q502W7 563 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 BCAS4Q8TDM0 211 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 ATP6V1G3Q96LB4 118 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 RNF39Q9H2S5 420 aa11.76□□□□□ -0.53
TCOF1-203ENST00000394269 DOCK3Q8IZD9 2030 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms