RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SCLT1Q96NL6 688 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 TRAIPQ9BWF2 469 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 IMPG2Q9BZV3 1241 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 SMYD3Q9H7B4 428 aa14.15□□□□□ -0.14
CCDC3-202ENST00000378839 CNOT10Q9H9A5 744 aaKnown RBP14.15□□□□□ -0.14
CCDC3-202ENST00000378839 ATXN2Q99700 1313 aaKnown RBP14.15□□□□□ -0.14
CCDC3-202ENST00000378839 B4GALT4O60513 344 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 KRT1P04264 644 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 ATF7P17544 494 aaPredicted RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 AP3M2P53677 418 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 RAD23BP54727 409 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CNGA2Q16280 664 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 P3H1Q32P28 736 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 IZUMO3Q5VZ72 239 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 FBXW10Q5XX13 1052 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 DNAJC24Q6P3W2 148 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 SPOCD1Q6ZMY3 1216 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 SYDE1Q6ZW31 735 aaPredicted RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 ZBTB8OSQ8IWT0 167 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CPB2Q96IY4 423 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 PCDHGC3Q9UN70 934 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 LACTBL1A8MY62 500 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 LSM8O95777 96 aaKnown RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 IREB2P48200 963 aaKnown RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 TRPC3Q13507 836 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 FASTKD3Q14CZ7 662 aaKnown RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 LRRC14Q15048 493 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 RAB6CQ53S08 254 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 HP1BP3Q5SSJ5 553 aaPredicted RBP14.14□□□□□ -0.15
CCDC3-202ENST00000378839 WDR78Q5VTH9 848 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 LRRC34Q8IZ02 419 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CPXM1Q96SM3 734 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 RAB6CQ9H0N0 254 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 GOLGA8SH3BPF8 625 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 DNM1LO00429 736 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CXCL11O14625 94 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 SLC25A27O95847 323 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 GAS8O95995 478 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 KRT19P08727 400 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CDKN2BP42772 138 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 GAD2Q05329 585 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 TAF5Q15542 800 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 SMTNL2Q2TAL5 461 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 KCNT1Q5JUK3 1230 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 JADE1Q6IE81 842 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 RCOR2Q8IZ40 523 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 EMC1Q8N766 993 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 MAIP1Q8WWC4 291 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 PPM1EQ8WY54 764 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 CHMP6Q96FZ7 201 aa14.14□□□□□ -0.15
CCDC3-202ENST00000378839 hCG_1818297A0A087WSY0 165 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 ERBB2P04626 1255 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 CD48P09326 243 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 GCAP28676 217 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 IFNAR2P48551 515 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 SLC25A11Q02978 314 aaKnown RBP14.13□□□□□ -0.15
CCDC3-202ENST00000378839 ARHGAP1Q07960 439 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 YTHDF3Q7Z739 585 aaKnown RBP14.13□□□□□ -0.15
CCDC3-202ENST00000378839 ERICH1Q86X53 443 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 TMEM35BQ8NCS4 154 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 GRK7Q8WTQ7 553 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 BCO2Q9BYV7 579 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 ELOVL4Q9GZR5 314 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 MLXIPLQ9NP71 852 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 GH1P01241 217 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 CALB1P05937 261 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 INSRRP14616 1297 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 EIF4BP23588 611 aaKnown RBP14.13□□□□□ -0.15
CCDC3-202ENST00000378839 KCTD2Q14681 263 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 CCDC142Q17RM4 750 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 RNF187Q5TA31 235 aaPredicted RBP14.13□□□□□ -0.15
CCDC3-202ENST00000378839 ANKRD13AQ8IZ07 590 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 SLC4A11Q8NBS3 891 aa14.13□□□□□ -0.15
CCDC3-202ENST00000378839 A0A087WZ62 844 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 POTEJP0CG39 1038 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 OASLQ15646 514 aaKnown RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 TAPT1Q6NXT6 567 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 DCUN1D2Q6PH85 259 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 OTUD6BQ8N6M0 293 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 LINC01465Q8N7H1 131 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 C3orf20Q8ND61 904 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 FDXACB1Q9BRP7 624 aaPredicted RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 TMEM121Q9BTD3 319 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ROPN1BQ9BZX4 212 aaPredicted RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ROPN1Q9HAT0 212 aaPredicted RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 EURLQ9NYK6 297 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 RNF181Q9P0P0 153 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 GGA2Q9UJY4 613 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 TNFSF13BQ9Y275 285 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 LRCH4O75427 683 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 BANF1O75531 89 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 VTNP04004 478 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 STAG3L1P0CL83 205 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 CYP3A5P20815 502 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 GDF10P55107 478 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 MAP1SQ66K74 1059 aaPredicted RBP14.12□□□□□ -0.15
CCDC3-202ENST00000378839 ALLCQ8N6M5 410 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 MGARPQ8TDB4 240 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 C2orf40Q9H1Z8 148 aa14.12□□□□□ -0.15
CCDC3-202ENST00000378839 SMARCAD1Q9H4L7 1026 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms