RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 GPATCH11Q8N954 259 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 TMEM35BQ8NCS4 154 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 CHST13Q8NET6 341 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 FOXP3Q9BZS1 431 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 TJP2Q9UDY2 1190 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 PAPPA2Q9BXP8 1791 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 EVPLQ92817 2033 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 SOWAHBA6NEL2 793 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 TOM1L1O75674 476 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 SUN1O94901 812 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 TCF7P36402 384 aaPredicted RBP20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 CDKN2BP42772 138 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 VCPP55072 806 aaKnown RBP20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 WDR4P57081 412 aaKnown RBP20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 MAGEB18Q96M61 343 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 ACO2Q99798 780 aaKnown RBP20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 MRPL4Q9BYD3 311 aaKnown RBP20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 NRBP2Q9NSY0 501 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 NKIRAS1Q9NYS0 192 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 BTBD7Q9P203 1132 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 ACTL7BQ9Y614 415 aa20.59■□□□□ 0.89
SHROOM1-202ENST00000378676 MARK3P27448 753 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 CCDC142Q17RM4 750 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 GALNTL6Q49A17 601 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 TFDP3Q5H9I0 405 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 RNASEH2BQ5TBB1 312 aaKnown RBP20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 ARHGEF18Q6ZSZ5 1173 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 EEPD1Q7L9B9 569 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 TBC1D1Q86TI0 1168 aaPredicted RBP20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 TRABD2AQ86V40 505 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 TMEM130Q8N3G9 435 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 RMDN2Q96LZ7 410 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 CFAP57Q96MR6 1250 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 TMEM121Q9BTD3 319 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 KIF9Q9HAQ2 790 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 PRKAG3Q9UGI9 489 aa20.58■□□□□ 0.89
SHROOM1-202ENST00000378676 SPAG7O75391 227 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 BANF1O75531 89 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 SRGAP2CP0DJJ0 459 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 TAC1P20366 129 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 PTPN7P35236 360 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 ASPAP45381 313 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 AP3M2P53677 418 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 GRM1Q13255 1194 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 DENND1BQ6P3S1 775 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 TRIM50Q86XT4 487 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 APOBEC3FQ8IUX4 373 aaKnown RBP20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 LRRC71Q8N4P6 559 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 CCHCR1Q8TD31 782 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 CXorf56Q9H5V9 222 aa20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 CPSF3Q9UKF6 684 aaKnown RBP20.58■□□□□ 0.88
SHROOM1-202ENST00000378676 POC1B-GALNT4F8VUJ3 575 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 OGTO15294 1046 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 PRKCBP05771 671 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 HOXC6P09630 235 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 CDH5P33151 784 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 MGAT5Q09328 741 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 CDCA2Q69YH5 1023 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 RIBC1Q8N443 379 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 ZNF668Q96K58 619 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 C10orf88Q9H8K7 445 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 GGA3Q9NZ52 723 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 PNMA3Q9UL41 463 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 POLIQ9UNA4 740 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 ARL2BPQ9Y2Y0 163 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 C3orf70A6NLC5 250 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 GOLGA8SH3BPF8 625 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 FZD9O00144 591 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 ATP6V1G2O95670 118 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 COPS2P61201 443 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 KCNJ2P63252 427 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 TFAMQ00059 246 aaKnown RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 GAD2Q05329 585 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 PTPN20Q4JDL3 420 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 FAM160B1Q5W0V3 765 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 ERICH1Q86X53 443 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 JOSD2Q8TAC2 188 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 ECT2Q9H8V3 914 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 SAE1Q9UBE0 346 aaPredicted RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 CYTH4Q9UIA0 394 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 PCDHGC3Q9UN70 934 aa20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 DRG1Q9Y295 367 aaKnown RBP20.57■□□□□ 0.88
SHROOM1-202ENST00000378676 EDNRBP24530 442 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 RAP1GAPP47736 663 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 DYNLT1P63172 113 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 LAMTOR4Q0VGL1 99 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 PIGHQ14442 188 aaPredicted RBP20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 PKN2Q16513 984 aaKnown RBP20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 LY6KQ17RY6 165 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 DUOXA2Q1HG44 320 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 SMTNL2Q2TAL5 461 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 ZNF699Q32M78 642 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 NIPA2Q8N8Q9 360 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 CEP120Q8N960 986 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 RNF149Q8NC42 400 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 TCP11Q8WWU5 503 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 NKD2Q969F2 451 aaPredicted RBP20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 XYLT2Q9H1B5 865 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 R3HDMLQ9H3Y0 253 aa20.56■□□□□ 0.88
SHROOM1-202ENST00000378676 FAM47DPA6NHR8 397 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms