RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TTC4O95801 387 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 MCF2P10911 925 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CDR2Q01850 454 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 MTM1Q13496 603 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 PTK2BQ14289 1009 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 FEZF2Q8TBJ5 459 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 ZC3H15Q8WU90 426 aaKnown RBP12.14□□□□□ -0.47
SYNE1-204ENST00000367248 LRGUKQ96M69 825 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 ZFATQ9P243 1243 aa12.14□□□□□ -0.47
SYNE1-204ENST00000367248 CASQ2O14958 399 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 KCNN4O15554 427 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 KIF19Q2TAC6 998 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 FAM171A1Q5VUB5 890 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 SNTG2Q9NY99 539 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 RBP3P10745 1247 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 LIG3P49916 1009 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 CYP24A1Q07973 514 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 FIGNQ5HY92 759 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 SV2AQ7L0J3 742 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 ACOT1Q86TX2 421 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 CCNYL1Q8N7R7 359 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 ACADMP11310 421 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 PON1P27169 355 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 P3H1Q32P28 736 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 SYDE1Q6ZW31 735 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 WDR49Q8IV35 697 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 PURBQ96QR8 312 aaKnown RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 FBXL5Q9UKA1 691 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 INTUQ9ULD6 942 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 ARHGEF28Q8N1W1 1705 aaKnown RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 POLR1AO95602 1720 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 H7C4K7 107 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 TCEA2Q15560 299 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 HIF1AQ16665 826 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 TACO1Q9BSH4 297 aaKnown RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 HTATIP2Q9BUP3 242 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 ADAM33Q9BZ11 813 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 CFLARO15519 480 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 CST8O60676 142 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 MAPTP10636 758 aaKnown RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 RAP1GAPP47736 663 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 EPHB3P54753 998 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 RBM43Q6ZSC3 357 aaKnown RBP12.13□□□□□ -0.47
SYNE1-204ENST00000367248 RD3Q7Z3Z2 195 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 TRIM48Q8IWZ4 208 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 ARHGAP18Q8N392 663 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 KLHL29Q96CT2 875 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 GTSE1Q9NYZ3 720 aa12.13□□□□□ -0.47
SYNE1-204ENST00000367248 TYK2P29597 1187 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 ELAVL2Q12926 359 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 PDK1Q15118 436 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 SMTNL2Q2TAL5 461 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 MFSD4BQ5TF39 518 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 IQSEC1Q6DN90 963 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 CRLF3Q8IUI8 442 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.12□□□□□ -0.471e-6■■■■■ 56.2
SYNE1-204ENST00000367248 RPRD1AQ96P16 312 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FAM118BQ9BPY3 351 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 A0A1B0GUA9 196 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TMEM150BA6NC51 233 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 SYNCRIPO60506 623 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 PHF2O75151 1096 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 MMEP08473 750 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 BRAFP15056 766 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 UBA1P22314 1058 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 GTF2A1P52655 376 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TRIM55Q9BYV6 548 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 PITPNM3Q9BZ71 974 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 ATXN3LQ9H3M9 355 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 EFEMP1Q12805 493 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 IKBKEQ14164 716 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 GIPC2Q8TF65 315 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 LRRC1Q9BTT6 524 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 KCNF1Q9H3M0 494 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 METTL5Q9NRN9 209 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 SUN2Q9UH99 717 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FOXP2O15409 715 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 CKBP12277 381 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FLT3LGP49771 235 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 RAB27AP51159 221 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 COPS2P61201 443 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 NCAPHQ15003 741 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TMEM119Q4V9L6 283 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 C11orf96Q7Z7L8 435 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 MAML1Q92585 1016 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 SDCCAG3Q96C92 435 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 EPC1Q9H2F5 836 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 CASS4Q9NQ75 786 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FRMPD4Q14CM0 1322 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 AP3B1O00203 1094 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 ACKR2O00590 384 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 CXCL8P10145 99 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 CTNNB1P35222 781 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 ARMC6Q6NXE6 501 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FAM47EQ6ZV65 393 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 ELMO3Q96BJ8 720 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 DNAJC7Q99615 494 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 BLOC1S4Q9NUP1 217 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms