RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 HES6Q96HZ4 224 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 NIF3L1Q9GZT8 377 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 IL1RL2Q9HB29 575 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 RGS4P49798 205 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 PLCL1Q15111 1095 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 ERAP2Q6P179 960 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 IFNEQ86WN2 208 aa16.27■□□□□ 0.19
PTPRF-201ENST00000359947 C1orf131Q8NDD1 294 aaKnown RBP16.27■□□□□ 0.19
PTPRF-201ENST00000359947 NCF1BA6NI72 391 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 NCF1CA8MVU1 366 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 MSH4O15457 936 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 NCF1P14598 390 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 SCUBE2Q9NQ36 999 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 SLC39A10Q9ULF5 831 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 GCLCP48506 637 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 TGFB2P61812 414 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 KDSRQ06136 332 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 NBPF20Q3BBV1 942 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 C7orf25Q9BPX7 421 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 DTNAQ9Y4J8 743 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 HEATR9A2RTY3 570 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 TBX3O15119 743 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 EPHB3P54753 998 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PHKG1Q16816 387 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 TSPAN17Q96FV3 270 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 RNF208Q9H0X6 261 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 SLC37A4O43826 429 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 DDX39BQ13838 428 aaKnown RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PDK1Q15118 436 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 ARHGAP18Q8N392 663 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 FAM71DQ8N9W8 422 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 RIT2Q99578 217 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 SYTL2Q9HCH5 934 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 FAM32AQ9Y421 112 aaKnown RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 RFX7Q2KHR2 1363 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 THP07101 528 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PNPLA4P41247 253 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PHACTR4Q8IZ21 702 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 CCSER1Q9C0I3 900 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 SENP6Q9GZR1 1112 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 FKBP9O95302 570 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PNMA6AP0CW24 399 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 CYP2C8P10632 490 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 FKBP9P1Q75LS8 142 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 ADGRF2Q8IZF7 708 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 DNAJB3Q8WWF6 145 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 PGLYRP2Q96PD5 576 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 MROH8Q9H579 483 aa16.26■□□□□ 0.19
PTPRF-201ENST00000359947 STN1Q9H668 368 aaKnown RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 UBQLN1Q9UMX0 589 aaKnown RBP16.26■□□□□ 0.19
PTPRF-201ENST00000359947 ALDH2P05091 517 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 SP100P23497 879 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 FBXO38Q6PIJ6 1188 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 PPP1R13LQ8WUF5 828 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 ENO1P06733 434 aaKnown RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 HPCAP84074 193 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 LONRF1Q17RB8 773 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 RUSC1Q9BVN2 902 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 IPPQ9Y573 584 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 KRT87PA6NCN2 255 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 KRT4P19013 534 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 CASP4P49662 377 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 FMR1Q06787 632 aaKnown RBP eCLIP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 MAPRE1Q15691 268 aaKnown RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 FAXCQ5TGI0 409 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 C10orf53Q8N6V4 93 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 ZFP42Q96MM3 310 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 MFSD1Q9H3U5 465 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 KCND2Q9NZV8 630 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 ARP10275 920 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 PPP2R2AP63151 447 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 UBE3AQ05086 875 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 BPIFA3Q9BQP9 254 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 FAM96AQ9H5X1 160 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 NEU2Q9Y3R4 380 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 V9GYQ6 96 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 GRID2IPA4D2P6 1211 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 USP27XA6NNY8 438 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 CST8O60676 142 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 SOX10P56693 466 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 PLIN5Q00G26 463 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 CXCL9Q07325 125 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 CCDC144BQ3MJ40 725 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 GPRASP2Q96D09 838 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.25■□□□□ 0.197e-6■□□□□ 8.6
PTPRF-201ENST00000359947 C9orf72Q96LT7 481 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 POP1Q99575 1024 aaKnown RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 PRMT1Q99873 361 aaKnown RBP16.25■□□□□ 0.19
PTPRF-201ENST00000359947 TRIM10Q9UDY6 481 aa16.25■□□□□ 0.19
PTPRF-201ENST00000359947 HSPA1AP0DMV8 641 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 HSPA1BP0DMV9 641 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 PWP1Q13610 501 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 DBR1Q9UK59 544 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 FAM187AA6NFU0 413 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 STX7O15400 261 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 RAP1GDS1P52306 607 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 NCALDP61601 193 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 BYSLQ13895 437 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 USP49Q70CQ1 688 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms