RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RPF1Q9H9Y2 349 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 INTS9Q9NV88 658 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 SIX4Q9UIU6 781 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 CEP83Q9Y592 693 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 GPR25O00155 361 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 IL18RAPO95256 599 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 OSBPP22059 807 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 RAP1GAPP47736 663 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 COPS2P61201 443 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 YWHAEP62258 255 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 LACTBP83111 547 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 TTLL12Q14166 644 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 HIBCHQ6NVY1 386 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 DRICH1Q6PGQ1 229 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 TAOK1Q7L7X3 1001 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 CDCA5Q96FF9 252 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 ANK1P16157 1881 aa22.01■■□□□ 1.11
CCDC88B-203ENST00000359902 MGAMO43451 1857 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 C22orf31O95567 290 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 KRT19P08727 400 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 TTLL4Q14679 1199 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 PACS2Q86VP3 889 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 RELL1Q8IUW5 271 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 OPTNQ96CV9 577 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 BCO2Q9BYV7 579 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 LHX5Q9H2C1 402 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 IFT122Q9HBG6 1241 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 CYTH4Q9UIA0 394 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 PTPN7P35236 360 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 P3H1Q32P28 736 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 PTPN20Q4JDL3 420 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 RNF187Q5TA31 235 aaPredicted RBP22■■□□□ 1.11
CCDC88B-203ENST00000359902 GKAP1Q5VSY0 366 aaPredicted RBP22■■□□□ 1.11
CCDC88B-203ENST00000359902 FASTKD5Q7L8L6 764 aaKnown RBP22■■□□□ 1.11
CCDC88B-203ENST00000359902 TMEM130Q8N3G9 435 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 GLIS1Q8NBF1 620 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 ACSF2Q96CM8 615 aaPredicted RBP22■■□□□ 1.11
CCDC88B-203ENST00000359902 NFKBIZQ9BYH8 718 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 FHDC1Q9C0D6 1143 aaPredicted RBP22■■□□□ 1.11
CCDC88B-203ENST00000359902 ERAP1Q9NZ08 941 aa22■■□□□ 1.11
CCDC88B-203ENST00000359902 hCG_1818297A0A087WSY0 165 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 TCEA3O75764 348 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 NFICP08651 508 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 CD19P15391 556 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 RFC1P35251 1148 aaPredicted RBP21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 CDH8P55286 799 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 CNGA2Q16280 664 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 WDR72Q3MJ13 1102 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 CACNA2D3Q8IZS8 1091 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 C1orf127Q8N9H9 656 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 SDCBP2Q9H190 292 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 CCDC134Q9H6E4 229 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 DDX56Q9NY93 547 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 STRIP2Q9ULQ0 834 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 ZNF148Q9UQR1 794 aa21.99■■□□□ 1.11
CCDC88B-203ENST00000359902 VGLL3A8MV65 326 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 LACTBL1A8MY62 500 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 CDKN2BP42772 138 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 RAD23BP54727 409 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 IGBP1P78318 339 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 TTC31Q49AM3 519 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 EAPPQ56P03 285 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 TFDP3Q5H9I0 405 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 ZNF667Q5HYK9 610 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 ARHGEF2Q92974 986 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 CABS1Q96KC9 395 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 PRMT1Q99873 361 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 PRMT7Q9NVM4 692 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 TJP2Q9UDY2 1190 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 EVPLQ92817 2033 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 SIGLEC16A6NMB1 481 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 CSDE1O75534 798 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 INSRRP14616 1297 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 RNF181Q9P0P0 153 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 CTNNAL1Q9UBT7 734 aa21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 DRG1Q9Y295 367 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-203ENST00000359902 GOLGA8SH3BPF8 625 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 MED7O43513 233 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 FSBPO95073 299 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ZSCAN5DPP0CG00 497 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 STAG3L1P0CL83 205 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ARHGAP1Q07960 439 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ZCCHC9Q8N567 271 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ALLCQ8N6M5 410 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 CCHCR1Q8TD31 782 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 LOC102724159A0A0B4J2E5 919 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 LRRD1A4D1F6 860 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ASB14A6NK59 587 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ITGBL1O95965 494 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 KRT3P12035 628 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 CREB1P16220 341 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 POLR2BP30876 1174 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 POU5F1BQ06416 359 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 PWP2Q15269 919 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 AMHR2Q16671 573 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 FAM187BQ17R55 369 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ZNF484Q5JVG2 852 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 GJC2Q5T442 439 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 JADE1Q6IE81 842 aa21.97■■□□□ 1.11
CCDC88B-203ENST00000359902 ARFGAP1Q8N6T3 406 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms