RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 A0A0A6YYK5 440 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 UBAP1LF5GYI3 381 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 AIM2O14862 343 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ZNF23P17027 643 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 SLC7A3Q8WY07 619 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 DNAJC7Q99615 494 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 USP44Q9H0E7 712 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 TTC7AQ9ULT0 858 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 NCKAP5LQ9HCH0 1330 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 MAGEB16A2A368 324 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 KLHL33A6NCF5 533 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 TRIM49BA6NDI0 452 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 TRIM49D1C9J1S8 452 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 NUMA1Q14980 2115 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 LRRC17Q8N6Y2 441 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 REXO4Q9GZR2 422 aaKnown RBP13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ARMT1Q9H993 441 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PXDNLA1KZ92 1463 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 AP3B2Q13367 1082 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 LINC00523Q86TU6 105 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PPIL6Q8IXY8 311 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 HAVCR1Q96D42 359 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ZNF221Q9UK13 617 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 PDE8AO60658 829 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 ATP6V1G1O75348 118 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 AAGABQ6PD74 315 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 FIS1Q9Y3D6 152 aa13.12□□□□□ -0.31
COL6A3-203ENST00000353578 QRICH2Q9H0J4 1663 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 UBE2QL1A1L167 161 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 CRKP46108 304 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 SEC24CP53992 1094 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 NCKAP1LP55160 1127 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 KCNA1Q09470 495 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 NAB1Q13506 487 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 FIGNQ5HY92 759 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MED10Q9BTT4 135 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MLXIPQ9HAP2 919 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 SPHKAPQ2M3C7 1700 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 APOL3O95236 402 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 FAM98BQ52LJ0 330 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 LIN54Q6MZP7 749 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 AMNQ9BXJ7 453 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 PZPP20742 1482 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MAP2K7O14733 419 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 UNC5CO95185 931 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MAPRE1Q15691 268 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 TRMT1LQ7Z2T5 733 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 NEDD1Q8NHV4 660 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MUC13Q9H3R2 512 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MEI4A8MW99 385 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 KPNA3O00505 521 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 COBLO75128 1261 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 PSMG1O95456 288 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 POLBP06746 335 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 BLMHQ13867 455 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 QPRTQ15274 297 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 RNF43Q68DV7 783 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 CYP4Z2PQ8N1L4 340 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 PHF8Q9UPP1 1060 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 PIPSLA2A3N6 862 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MAFGO15525 162 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 GDF11O95390 407 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 CLHC1Q8NHS4 586 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 DDX18Q9NVP1 670 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MYBL2P10244 700 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 DYNLT1P63172 113 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 KCNH2Q12809 1159 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 ARID5BQ14865 1188 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 KRT24Q2M2I5 525 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 SPICE1Q8N0Z3 855 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 PSMA8Q8TAA3 256 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 AENQ8WTP8 325 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 SLC13A1Q9BZW2 595 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 VTA1Q9NP79 307 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 COMMD8Q9NX08 183 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 TMEM161AQ9NX61 479 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 A0A0B4J269 797 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 TIMM44O43615 452 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 TUBB3Q13509 450 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 MTFR1Q15390 333 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 LRRC34Q8IZ02 419 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 RAB26Q9ULW5 256 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 A2MP01023 1474 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 KRT34O76011 436 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 ARIH2O95376 493 aa13.11□□□□□ -0.31
COL6A3-203ENST00000353578 DRAXINQ8NBI3 349 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 DQX1Q8TE96 717 aaKnown RBP13.11□□□□□ -0.31
COL6A3-203ENST00000353578 ZBTB24O43167 697 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-203ENST00000353578 CASP4P49662 377 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 SMYD4Q8IYR2 804 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-203ENST00000353578 XXYLT1Q8NBI6 393 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 RDH13Q8NBN7 331 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 ERGIC2Q96RQ1 377 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 ARHGEF33A8MVX0 844 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 GLRA3O75311 464 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 MAP3K19Q56UN5 1328 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 PPHLN1Q8NEY8 458 aaKnown RBP13.1□□□□□ -0.31
COL6A3-203ENST00000353578 BCAR1P56945 870 aa13.1□□□□□ -0.31
COL6A3-203ENST00000353578 SEL1L3Q68CR1 1132 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms