RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FHDC1Q9C0D6 1143 aaPredicted RBP23.37■■□□□ 1.33
UPF3A-201ENST00000351487 NOP56O00567 594 aaKnown RBP23.36■■□□□ 1.33
UPF3A-201ENST00000351487 RASSF9O75901 435 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 SLC25A27O95847 323 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 TNNC2P02585 160 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 CDKN2BP42772 138 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 SCTRP47872 440 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 ZFYVE27Q5T4F4 411 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 ATF7IP2Q5U623 682 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 TXNRD3NBQ6F5E7 133 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 PRUNE1Q86TP1 453 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 GLIS1Q8NBF1 620 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 ANKRD36BP1Q96IX9 119 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 C9orf72Q96LT7 481 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 ZNF148Q9UQR1 794 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 MCM3APO60318 1980 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 ZSWIM8A7E2V4 1837 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 CETPP11597 493 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 MAGEA4P43358 317 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 VCPP55072 806 aaKnown RBP23.36■■□□□ 1.33
UPF3A-201ENST00000351487 TFDP1Q14186 410 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 LHX5Q9H2C1 402 aa23.36■■□□□ 1.33
UPF3A-201ENST00000351487 OAS1P00973 400 aaKnown RBP23.35■■□□□ 1.33
UPF3A-201ENST00000351487 ITGAVP06756 1048 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 SLC26A2P50443 739 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 SCARA5Q6ZMJ2 495 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 RHPN2Q8IUC4 686 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 DYDC1Q8WWB3 177 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 FAXDC2Q96IV6 333 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 ASCC2Q9H1I8 757 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-201ENST00000351487 NAALADL1Q9UQQ1 740 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 NDC80O14777 642 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 BRAFP15056 766 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 GSCP56915 257 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-201ENST00000351487 CCDC142Q17RM4 750 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 PTPN20Q4JDL3 420 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 THNSL1Q8IYQ7 743 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 CYP4X1Q8N118 509 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 FNIP1Q8TF40 1166 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 TTC25Q96NG3 672 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 ELAC2Q9BQ52 826 aaKnown RBP23.35■■□□□ 1.33
UPF3A-201ENST00000351487 BCO2Q9BYV7 579 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 R3HDMLQ9H3Y0 253 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 EFR3BQ9Y2G0 817 aa23.35■■□□□ 1.33
UPF3A-201ENST00000351487 SNX3O60493 162 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 POLR2BP30876 1174 aaKnown RBP23.34■■□□□ 1.33
UPF3A-201ENST00000351487 ARSEP51690 589 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 MORF4L2Q15014 288 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 LRRC14Q15048 493 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 CYP4A22Q5TCH4 519 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 CFAP57Q96MR6 1250 aa23.34■■□□□ 1.33
UPF3A-201ENST00000351487 TPX2Q9ULW0 747 aaKnown RBP23.34■■□□□ 1.33
UPF3A-201ENST00000351487 DNAJC25-GNG10A0A024R161 153 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 LRRD1A4D1F6 860 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 IL18RAPO95256 599 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 LACTBP83111 547 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-201ENST00000351487 DENND1BQ6P3S1 775 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 CCDC62Q6P9F0 684 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 CEP120Q8N960 986 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 CKAP2Q8WWK9 683 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 PCDH9Q9HC56 1237 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 TNFSF13BQ9Y275 285 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 EVPLQ92817 2033 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 C3orf70A6NLC5 250 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SIGLEC16A6NMB1 481 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 MED7O43513 233 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 DNAJC8O75937 253 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-201ENST00000351487 GSTA1P08263 222 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SLC25A11Q02978 314 aaKnown RBP23.33■■□□□ 1.33
UPF3A-201ENST00000351487 MPP2Q14168 576 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 EEF1DP3Q658K8 133 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 ICE2Q659A1 982 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SLC35B2Q8TB61 432 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 MGARPQ8TDB4 240 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SPATA33Q96N06 139 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 CDT1Q9H211 546 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SLC40A1Q9NP59 571 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 SHOC2Q9UQ13 582 aa23.33■■□□□ 1.33
UPF3A-201ENST00000351487 INO80B-WBP1J3KQ70 363 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 B4GALT5O43286 388 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 PGK2P07205 417 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 ZSCAN5DPP0CG00 497 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 MBTD1Q05BQ5 628 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 GPS1Q13098 491 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 WDR72Q3MJ13 1102 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 TMEM63BQ5T3F8 832 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 DLK2Q6UY11 383 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 TDRPQ86YL5 185 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 NLRP4Q96MN2 994 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 NFKBIZQ9BYH8 718 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 INO80BQ9C086 356 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-201ENST00000351487 SMARCAD1Q9H4L7 1026 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 SAYSD1Q9NPB0 183 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 POLIQ9UNA4 740 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 PECAM1P16284 738 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-201ENST00000351487 RFC1P35251 1148 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-201ENST00000351487 XRCC4Q13426 336 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 RNASEH2BQ5TBB1 312 aaKnown RBP23.32■■□□□ 1.32
UPF3A-201ENST00000351487 CYP4F22Q6NT55 531 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 MAML1Q92585 1016 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms