RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 SERPINB12Q96P63 405 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 MMP19Q99542 508 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 SDCBP2Q9H190 292 aa16.33■□□□□ 0.2
UPF3B-202ENST00000345865 SPDYE5A6NIY4 337 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 CXCL11O14625 94 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 NFICP08651 508 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 TXNP10599 105 aaKnown RBP16.32■□□□□ 0.2
UPF3B-202ENST00000345865 RFC1P35251 1148 aaPredicted RBP16.32■□□□□ 0.2
UPF3B-202ENST00000345865 CDR1P51861 262 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 SF3A3Q12874 501 aaKnown RBP eCLIP16.32■□□□□ 0.2
UPF3B-202ENST00000345865 SURF1Q15526 300 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 WDR78Q5VTH9 848 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 FBXW10Q5XX13 1052 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 KCNV1Q6PIU1 500 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 VSTM1Q6UX27 236 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 GSTA5Q7RTV2 222 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 LRRC34Q8IZ02 419 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 KIAA0319LQ8IZA0 1049 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 JOSD2Q8TAC2 188 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 ARHGEF2Q92974 986 aaKnown RBP16.32■□□□□ 0.2
UPF3B-202ENST00000345865 HAUS1Q96CS2 278 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 RBM41Q96IZ5 413 aaKnown RBP16.32■□□□□ 0.2
UPF3B-202ENST00000345865 CABS1Q96KC9 395 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 ZNF518BQ9C0D4 1074 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 IFT122Q9HBG6 1241 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 KCNH4Q9UQ05 1017 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 CAPN7Q9Y6W3 813 aa16.32■□□□□ 0.2
UPF3B-202ENST00000345865 FSBPO95073 299 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 KRT19P08727 400 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 IFNAR2P48551 515 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 KCTD2Q14681 263 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 LRRC38Q5VT99 294 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 CACNA2D3Q8IZS8 1091 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 C1orf127Q8N9H9 656 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 TWNKQ96RR1 684 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 PPP1R16BQ96T49 567 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 HMGXB4Q9UGU5 601 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 hCG_1818297A0A087WSY0 165 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 TNNC2P02585 160 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 CDKN2BP42772 138 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 IGBP1P78318 339 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 LRRC14Q15048 493 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 WDR72Q3MJ13 1102 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 GKAP1Q5VSY0 366 aaPredicted RBP16.31■□□□□ 0.2
UPF3B-202ENST00000345865 ANKRD13AQ8IZ07 590 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 ANKRD36BP1Q96IX9 119 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 SMARCAD1Q9H4L7 1026 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC134Q9H6E4 229 aa16.31■□□□□ 0.2
UPF3B-202ENST00000345865 C3orf70A6NLC5 250 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 GOLGA8SH3BPF8 625 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 TJP3O95049 919 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 C22orf31O95567 290 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 CD19P15391 556 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 RAD23BP54727 409 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 LACTBP83111 547 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 MPP2Q14168 576 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 TMEM132AQ24JP5 1023 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 DRICH1Q6PGQ1 229 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 ARMC9Q7Z3E5 817 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 ALLCQ8N6M5 410 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 NIPA2Q8N8Q9 360 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 CXorf38Q8TB03 319 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 STMN4Q9H169 189 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 SAE1Q9UBE0 346 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 ZNF148Q9UQR1 794 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 TNFSF13BQ9Y275 285 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 LRRD1A4D1F6 860 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 LACTBL1A8MY62 500 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 DNM1LO00429 736 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 HBP1O60381 514 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 IL1R2P27930 398 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 PIGHQ14442 188 aaPredicted RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 OASLQ15646 514 aaKnown RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 TAOK1Q7L7X3 1001 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 RELL1Q8IUW5 271 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 EXOC8Q8IYI6 725 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 CPXM1Q96SM3 734 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 RBM15Q96T37 977 aaKnown RBP eCLIP16.3■□□□□ 0.24e-6■□□□□ 8.6
UPF3B-202ENST00000345865 BCO2Q9BYV7 579 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 SMYD3Q9H7B4 428 aa16.3■□□□□ 0.2
UPF3B-202ENST00000345865 RPF1Q9H9Y2 349 aaKnown RBP16.3■□□□□ 0.2
UPF3B-202ENST00000345865 TMEM120BA0PK00 339 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 TCEA3O75764 348 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 SLC25A11Q02978 314 aaKnown RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 TFDP1Q14186 410 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 AMHR2Q16671 573 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 SMTNL2Q2TAL5 461 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 TFDP3Q5H9I0 405 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 KCNT1Q5JUK3 1230 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 PIGWQ7Z7B1 504 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 ZCCHC9Q8N567 271 aaKnown RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 MGARPQ8TDB4 240 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 OPTNQ96CV9 577 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 CDCA5Q96FF9 252 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 MPHOSPH6Q99547 160 aaKnown RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 EFCC1Q9HA90 598 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 TBK1Q9UHD2 729 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 DNALI1O14645 258 aaPredicted RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 LRCH4O75427 683 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 INSRRP14616 1297 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms