RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 RPL17P18621 184 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 ARPP19P56211 112 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 YWHAEP62258 255 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 NOP14P78316 857 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 ADAM15Q13444 863 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 RAB33AQ14088 237 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 MAPRE1Q15691 268 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 SOWAHAQ2M3V2 549 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 CBWD6Q4V339 395 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 VWA3BQ502W6 1294 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 CBWD3Q5JTY5 395 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 CBWD5Q5RIA9 395 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 SLC8B1Q6J4K2 584 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 ADGRD2Q7Z7M1 963 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 PALB2Q86YC2 1186 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 TMEM130Q8N3G9 435 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 AOPEPQ8N6M6 819 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 ZNF461Q8TAF7 563 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 HDAC7Q8WUI4 952 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 HLA-CQ95604 372 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 PABPC5Q96DU9 382 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 FAM81BQ96LP2 452 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 ACBD6Q9BR61 282 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 CYP3A43Q9HB55 503 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 SAMSN1Q9NSI8 373 aaKnown RBP12.67□□□□□ -0.38
SNCA-202ENST00000345009 DZANK1Q9NVP4 752 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 CLDND1Q9NY35 253 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 L1RE1Q9UN81 338 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 BRWD1Q9NSI6 2320 aa12.67□□□□□ -0.38
SNCA-202ENST00000345009 GTPBP10A4D1E9 387 aaKnown RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 TBC1D4O60343 1298 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 COL9A1P20849 921 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 WARSP23381 471 aaKnown RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 TBXAS1P24557 533 aaPredicted RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 CLCN4P51793 760 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 GPR17Q13304 367 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 NFE2Q16621 373 aaPredicted RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 AAK1Q2M2I8 961 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 HSP90AA4PQ58FG1 418 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 FKBP15Q5T1M5 1219 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 LIN9Q5TKA1 542 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 CDKAL1Q5VV42 579 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 TMEM184AQ6ZMB5 413 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 GBP6Q6ZN66 633 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 CCDC149Q6ZUS6 474 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 GLYCTKQ8IVS8 523 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 EHBP1Q8NDI1 1231 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 OR6B3Q8NGW1 331 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 C2orf15Q8WU43 125 aaKnown RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 RNF166Q96A37 237 aaPredicted RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 TNIP3Q96KP6 325 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 FUCA2Q9BTY2 467 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 NIF3L1Q9GZT8 377 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 NDST4Q9H3R1 872 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 TSPY26PQ9H489 355 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 DDX43Q9NXZ2 648 aaKnown RBP12.66□□□□□ -0.38
SNCA-202ENST00000345009 VPS9D1Q9Y2B5 631 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 HCFC2Q9Y5Z7 792 aa12.66□□□□□ -0.38
SNCA-202ENST00000345009 PRUNE2Q8WUY3 3088 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 A8MXQ7 604 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 PRRG1O14668 218 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 GABRDO14764 452 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 TGM5O43548 720 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 EXOC3L4Q17RC7 722 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 CTC1Q2NKJ3 1217 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 UVSSAQ2YD98 709 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 FILIP1LQ4L180 1135 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 LLGL2Q6P1M3 1020 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 LRSAM1Q6UWE0 723 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 LIMS2Q7Z4I7 341 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 UNC93AQ86WB7 457 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 FAM200AQ8TCP9 573 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 SLC22A17Q8WUG5 538 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 NT5C1BQ96P26 610 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 PI4K2AQ9BTU6 479 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 AFF4Q9UHB7 1163 aaKnown RBP12.65□□□□□ -0.38
SNCA-202ENST00000345009 CDH9Q9ULB4 789 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 FAM50BQ9Y247 325 aa12.65□□□□□ -0.38
SNCA-202ENST00000345009 LRRC10BA6NIK2 292 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 ABLIM3O94929 683 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 PDGFRBP09619 1106 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 ATF2P15336 505 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 GTF2F1P35269 517 aaKnown RBP eCLIP12.64□□□□□ -0.39
SNCA-202ENST00000345009 MLLT3P42568 568 aaPredicted RBP12.64□□□□□ -0.39
SNCA-202ENST00000345009 ROR1Q01973 937 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 COL19A1Q14993 1142 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 TSR1Q2NL82 804 aaKnown RBP12.64□□□□□ -0.39
SNCA-202ENST00000345009 PUS10Q3MIT2 529 aaKnown RBP12.64□□□□□ -0.39
SNCA-202ENST00000345009 CES5AQ6NT32 575 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 LILRA6Q6PI73 481 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 C4orf50Q6ZRC1 276 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 ENOSF1Q7L5Y1 443 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 KREMEN2Q8NCW0 462 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 SEMA4DQ92854 862 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 UBE2ZQ9H832 354 aaPredicted RBP12.64□□□□□ -0.39
SNCA-202ENST00000345009 SFXN1Q9H9B4 322 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 GCNT4Q9P109 453 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 HSFX1Q9UBD0 423 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 POLIQ9UNA4 740 aa12.64□□□□□ -0.39
SNCA-202ENST00000345009 COL4A4P53420 1690 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms