RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CDKL2Q92772 493 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ULK4Q96C45 1275 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 RTFDC1Q9BY42 306 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 RPRD1BQ9NQG5 326 aaKnown RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 TMEM51Q9NW97 253 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FEZ2Q9UHY8 353 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ZFP37Q9Y6Q3 630 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 PASKQ96RG2 1323 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 TET3O43151 1660 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ZMYM6O95789 1325 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 SOWAHBA6NEL2 793 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 H3BUI4 141 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 RRM1P23921 792 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FOXK2Q01167 660 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ACOX1Q15067 660 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 FAM129CQ86XR2 697 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 AVL9Q8NBF6 648 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 MCUQ8NE86 351 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 WHAMMQ8TF30 809 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 ARHGEF3Q9NR81 526 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 EMILIN3Q9NT22 766 aa8.85□□□□□ -0.99
HMGB1-203ENST00000341423 KLHL8Q9P2G9 620 aaPredicted RBP8.85□□□□□ -0.99
HMGB1-203ENST00000341423 IGSF6O95976 241 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 RPN2P04844 631 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 ARP10275 920 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF445P59923 1031 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 PCNX4Q63HM2 1172 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 C16orf46Q6P387 395 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CYP26C1Q6V0L0 522 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CCDC170Q8IYT3 715 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 ADGRF2Q8IZF7 708 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CHTF18Q8WVB6 975 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 HDAC11Q96DB2 347 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 TIGD1Q96MW7 591 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 TSGA10Q9BZW7 698 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 UBE4BO95155 1302 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 GOLGA6L7A0A1B0GV03 622 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF217O75362 1048 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 FGFR1P11362 822 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 NR2F2P24468 414 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 SPIDRQ14159 915 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 GPIHBP1Q8IV16 184 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 PPTC7Q8NI37 304 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 SPPL2BQ8TCT7 592 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 BPIFB1Q8TDL5 484 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 C2orf49Q9BVC5 232 aaPredicted RBP8.84□□□□□ -0.99
HMGB1-203ENST00000341423 DPP3Q9NY33 737 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CDH7Q9ULB5 785 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 PIK3C2BO00750 1634 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 TACC1O75410 805 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 SULT2A1Q06520 285 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 LAMB3Q13751 1172 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 Q7L0L9 218 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 FBXL6Q8N531 539 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 EXD1Q8NHP7 514 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 EGFL8Q99944 293 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 TUFT1Q9NNX1 390 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 INTS10Q9NVR2 710 aaKnown RBP8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CRLS1Q9UJA2 301 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 PKP3Q9Y446 797 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 KPNA2P52292 529 aaKnown RBP8.84□□□□□ -0.99
HMGB1-203ENST00000341423 FOXO4P98177 505 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 KSR1Q8IVT5 923 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 COLGALT2Q8IYK4 626 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CYP4X1Q8N118 509 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CCDC33Q8N5R6 958 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 TOX2Q96NM4 488 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 PHF7Q9BWX1 381 aaPredicted RBP8.84□□□□□ -0.99
HMGB1-203ENST00000341423 DPEP2Q9H4A9 486 aa8.84□□□□□ -0.99
HMGB1-203ENST00000341423 CUTAO60888 179 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 GCATO75600 419 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 MLH1P40692 756 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 TPI1P60174 286 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 PRAMEP78395 509 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 BMP2KLQ5H9B9 411 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 ATL3Q6DD88 541 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 DENND5BQ6ZUT9 1274 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 ARL14Q8N4G2 192 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 SYT15Q9BQS2 421 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 NUP85Q9BW27 656 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 ADAMTS10Q9H324 1103 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 LRRC4CQ9HCJ2 640 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 MAPK8IP1Q9UQF2 711 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 DMTF1Q9Y222 760 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 CDY1Q9Y6F8 540 aa8.84□□□□□ -1
HMGB1-203ENST00000341423 ROBO1Q9Y6N7 1651 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 DFFAO00273 331 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 NFIBO00712 420 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 FPGTO14772 594 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PRPF3O43395 683 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 TADA3O75528 432 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SATB1Q01826 763 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 TUSC3Q13454 348 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SMAD4Q13485 552 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 KIAA1211LQ6NV74 962 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 CELF5Q8N6W0 485 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 ASNSD1Q9NWL6 643 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 GPSM3Q9Y4H4 160 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 ARHGAP42A6NI28 874 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 VPS4BO75351 444 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms