RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CC2D1AQ6P1N0 951 aaPredicted RBP14.2□□□□□ -0.14
HMGB1-202ENST00000339872 WDR93Q6P2C0 686 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 DNAJC24Q6P3W2 148 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 LPPQ93052 612 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 KRT12Q99456 494 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 CYTH4Q9UIA0 394 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 TMEM59LQ9UK28 342 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 TRIM17Q9Y577 477 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 A0A1W2PQ45 241 aaPredicted RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 A0A1W2PQY0 241 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 O00370 1275 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 KRIT1O00522 736 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 ZMYND10O75800 440 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 TUBBP07437 444 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 CYP3A5P20815 502 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 CTNNA2P26232 953 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PNPLA4P41247 253 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 TAF6P49848 677 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PEX5P50542 639 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PRMT2P55345 433 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 LPIN1Q14693 890 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 TRIM71Q2Q1W2 868 aaKnown RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PTPN20Q4JDL3 420 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 KLHL7Q8IXQ5 586 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 FEZF2Q8TBJ5 459 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 HDAC7Q8WUI4 952 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 TSEN34Q9BSV6 310 aaKnown RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 ARFGAP3Q9NP61 516 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 SAGE1Q9NXZ1 904 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 KPNA7A9QM74 516 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 SPTLC1O15269 473 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 ERLIN1O75477 346 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PROSCO94903 275 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 IBSPP21815 317 aaPredicted RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 SLC7A5Q01650 507 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 CNGA2Q16280 664 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 LONRF2Q1L5Z9 754 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 SOWAHAQ2M3V2 549 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 SV2CQ496J9 727 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 ZNF618Q5T7W0 954 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 AADACL2Q6P093 401 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 OR6B3Q8NGW1 331 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 UBE2Q2Q8WVN8 375 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 MCEEQ96PE7 176 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PPP1R10Q96QC0 940 aaKnown RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 GAD1Q99259 594 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 HINFPQ9BQA5 517 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 STARD7Q9NQZ5 370 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 STRIP2Q9ULQ0 834 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 TTC7AQ9ULT0 858 aaPredicted RBP14.19□□□□□ -0.14
HMGB1-202ENST00000339872 PCDHA3Q9Y5H8 950 aa14.19□□□□□ -0.14
HMGB1-202ENST00000339872 MGEA5O60502 916 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 MCM3P25205 808 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 SLC1A1P43005 524 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 RPL7AP62424 266 aaKnown RBP14.18□□□□□ -0.14
HMGB1-202ENST00000339872 SEL1L2Q5TEA6 688 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 DAB2IPQ5VWQ8 1189 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 ACOT1Q86TX2 421 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 C12orf29Q8N999 325 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 SH3TC2Q8TF17 1288 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 TRPV6Q9H1D0 765 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 SYNCQ9H7C4 482 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 TJP2Q9UDY2 1190 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 DMGDHQ9UI17 866 aaKnown RBP14.18□□□□□ -0.14
HMGB1-202ENST00000339872 TSPAN16Q9UKR8 245 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 KIAA1257Q9ULG3 409 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 FAM26DQ5JW98 314 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 DCUN1D2Q6PH85 259 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 ADAT2Q7Z6V5 191 aaKnown RBP14.18□□□□□ -0.14
HMGB1-202ENST00000339872 RNF169Q8NCN4 708 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 C3orf20Q8ND61 904 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.18□□□□□ -0.14
HMGB1-202ENST00000339872 UBA3Q8TBC4 463 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 CPXM1Q96SM3 734 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 NAP1L3Q99457 506 aaPredicted RBP14.18□□□□□ -0.14
HMGB1-202ENST00000339872 NME7Q9Y5B8 376 aa14.18□□□□□ -0.14
HMGB1-202ENST00000339872 TCRBV5S1A1TA0A578 114 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 GOLGA8SH3BPF8 625 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 CCDC188H7C350 402 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 LRPAP1P30533 357 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 RWDD2BP57060 319 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 PDCLQ13371 301 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 GOLGA7BQ2TAP0 167 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 GLE1Q53GS7 698 aaKnown RBP14.17□□□□□ -0.14
HMGB1-202ENST00000339872 AGMOQ6ZNB7 445 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 GSTCDQ8NEC7 633 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 APPL2Q8NEU8 664 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.17□□□□□ -0.14
HMGB1-202ENST00000339872 PLEKHA4Q9H4M7 779 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 FAM49BQ9NUQ9 324 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 SLC38A7Q9NVC3 462 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 GDAP2Q9NXN4 497 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 STIM2Q9P246 746 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 CACNG4Q9UBN1 327 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 USTQ9Y2C2 406 aa14.17□□□□□ -0.14
HMGB1-202ENST00000339872 A0A0U1RQG5 324 aaPredicted RBP14.16□□□□□ -0.14
HMGB1-202ENST00000339872 TMEM191CA6NGB0 347 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 ARL5CA6NH57 179 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 A8MXQ7 604 aa14.16□□□□□ -0.14
HMGB1-202ENST00000339872 HCRTO43612 131 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms