RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 CCDC149Q6ZUS6 474 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 LRRC49Q8IUZ0 686 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 MCPH1Q8NEM0 835 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 APPL2Q8NEU8 664 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ARNTL2Q8WYA1 636 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.44□□□□□ -1.86
CSMD3-202ENST00000339701 NEUROG2Q9H2A3 272 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 LRRC4Q9HBW1 653 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 DISC1Q9NRI5 854 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PAG1Q9NWQ8 432 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 HDAC6Q9UBN7 1215 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 ATPIF1Q9UII2 106 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 PCDHB15Q9Y5E8 787 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 FHOD1Q9Y613 1164 aa3.44□□□□□ -1.86
CSMD3-202ENST00000339701 FAM187AA6NFU0 413 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 PDHXO00330 501 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SLC9A3R1O14745 358 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TAF5LO75529 589 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 DAB1O75553 588 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 FGF19O95750 216 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CCDC159P0C7I6 412 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TNNI1P19237 187 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ACADVLP49748 655 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 MKRN4PQ13434 485 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 UBXN2BQ14CS0 331 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ARMCX4Q5H9R4 360 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 KRT40Q6A162 431 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CLEC17AQ6ZS10 378 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ATP8B4Q8TF62 1192 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SCFD2Q8WU76 684 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 HNRNPLLQ8WVV9 542 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 KCNB2Q92953 911 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 MOCOSQ96EN8 888 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CLSTN2Q9H4D0 955 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SH3GLB2Q9NR46 395 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 DKK3Q9UBP4 350 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CPA4Q9UI42 421 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TRIP11Q15643 1979 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SAGE2PA6NJ88 616 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 FAM47E-STBD1D6RA91 191 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 H3BNX3 289 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CCNT1O60563 726 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 S100A1P23297 94 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 AARSP49588 968 aaKnown RBP eCLIP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 EPHB3P54753 998 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GMFBP60983 142 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ITKQ08881 620 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 IQCB1Q15051 598 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ZMYND11Q15326 602 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SIX6OS1Q8N1H7 587 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GDAP1Q8TB36 358 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 BRD9Q9H8M2 597 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GPN3Q9UHW5 284 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 KCNH3Q9ULD8 1083 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SQORQ9Y6N5 450 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ZNF236Q9UL36 1845 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 WDR81Q562E7 1941 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 FAM95CA0A1B0GW59 222 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 A0A1W2PQC6 194 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 IRGMA1A4Y4 181 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SYNDIG1LA6NDD5 238 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CBFA2T3O75081 653 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ITGB6P18564 788 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GJB2P29033 226 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 OR1G1P47890 313 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 XIAPP98170 497 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 KCNB1Q14721 858 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ASPRV1Q53RT3 343 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 PRMT9Q6P2P2 845 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CDR2LQ86X02 465 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SNX32Q86XE0 403 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 EID3Q8N140 333 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 MYO1HQ8N1T3 1032 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 NSUN6Q8TEA1 469 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 DLG3Q92796 817 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 PHF20Q9BVI0 1012 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CLDND1Q9NY35 253 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ABI3Q9P2A4 366 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SRP68Q9UHB9 627 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TBK1Q9UHD2 729 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 NINQ8N4C6 2090 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SHANK3Q9BYB0 1731 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TBC1D4O60343 1298 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CNOT3O75175 753 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 PFKMP08237 780 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CHRNA3P32297 505 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 RPL3P39023 403 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 SCNN1BP51168 640 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ITGA9Q13797 1035 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 STAT4Q14765 748 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GET4Q7L5D6 327 aaPredicted RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 KDELC2Q7Z4H8 507 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 C11orf74Q86VG3 221 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 MRPS31Q92665 395 aaKnown RBP3.43□□□□□ -1.86
CSMD3-202ENST00000339701 CASP10Q92851 521 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GMCL1Q96IK5 515 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 FAXDC2Q96IV6 333 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 ESYT1Q9BSJ8 1104 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 TRAIPQ9BWF2 469 aa3.43□□□□□ -1.86
CSMD3-202ENST00000339701 GLIS2Q9BZE0 524 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms