RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ADAM12O43184 909 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 CNPP09543 421 aaKnown RBP23.66■■□□□ 1.38
SDC3-202ENST00000339394 PCSK1P29120 753 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 ZNF75DP51815 510 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 YWHAEP62258 255 aaKnown RBP23.66■■□□□ 1.38
SDC3-202ENST00000339394 RAPGEF1Q13905 1077 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 UNC93AQ86WB7 457 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 TWNKQ96RR1 684 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 TMEM209Q96SK2 561 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 OXCT2Q9BYC2 517 aaPredicted RBP23.66■■□□□ 1.38
SDC3-202ENST00000339394 STK33Q9BYT3 514 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 FNIP2Q9P278 1114 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 PLXNA4Q9HCM2 1894 aa23.66■■□□□ 1.38
SDC3-202ENST00000339394 TEX28O15482 410 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 ORC1Q13415 861 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 ZNF394Q53GI3 561 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 SLC8B1Q6J4K2 584 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 TMEM270Q6UE05 265 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 VSTM4Q8IW00 320 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 DPEP3Q9H4B8 488 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 NLRC4Q9NPP4 1024 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 DAAM1Q9Y4D1 1078 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 PCDHB4Q9Y5E5 795 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 OR6C75A6NL08 312 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 OR1D2P34982 312 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 CREMQ03060 361 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 DRAP1Q14919 205 aaPredicted RBP23.65■■□□□ 1.38
SDC3-202ENST00000339394 SPECC1LQ69YQ0 1117 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 GLYCTKQ8IVS8 523 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 SHC3Q92529 594 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 MRFAP1L1Q96HT8 127 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 NT5C1AQ9BXI3 368 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 EMILIN2Q9BXX0 1053 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 TTYH3Q9C0H2 523 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 GPR88Q9GZN0 384 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 CDH9Q9ULB4 789 aa23.65■■□□□ 1.38
SDC3-202ENST00000339394 ITIH6Q6UXX5 1313 aa23.64■■□□□ 1.38
SDC3-202ENST00000339394 FOXN3O00409 490 aaPredicted RBP23.64■■□□□ 1.37
SDC3-202ENST00000339394 ATP2C2O75185 946 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 OR4Q2P0C623 313 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 PSMC1P62191 440 aaKnown RBP23.64■■□□□ 1.37
SDC3-202ENST00000339394 GSE1Q14687 1217 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 FIGNQ5HY92 759 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 Q7L0L9 218 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 ACOT1Q86TX2 421 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 LRRTM3Q86VH5 581 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 KLHL5Q96PQ7 755 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 SYT15Q9BQS2 421 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 NUP58Q9BVL2 599 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 ELOVL4Q9GZR5 314 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 ZCWPW1Q9H0M4 648 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 CEP72Q9P209 647 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 CNTN6Q9UQ52 1028 aa23.64■■□□□ 1.37
SDC3-202ENST00000339394 VWA8A3KMH1 1905 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 RNF225M0QZC1 329 aaPredicted RBP23.63■■□□□ 1.37
SDC3-202ENST00000339394 KRT5P13647 590 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 NDUFV1P49821 464 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 FXR1P51114 621 aaKnown RBP eCLIP23.63■■□□□ 1.37
SDC3-202ENST00000339394 RAD23BP54727 409 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 ARPP19P56211 112 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 TSPY1Q01534 308 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 ADGRE1Q14246 886 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 INTS6LQ5JSJ4 861 aaKnown RBP23.63■■□□□ 1.37
SDC3-202ENST00000339394 CACNA2D4Q7Z3S7 1137 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 CRYBG2Q8N1P7 616 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 TMEM176AQ96HP8 235 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 TNIP3Q96KP6 325 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 LMCD1Q9NZU5 365 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 GTF3C4Q9UKN8 822 aa23.63■■□□□ 1.37
SDC3-202ENST00000339394 MYBPHLA2RUH7 354 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 F8VZ95 297 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 ADCY5O95622 1261 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 PNMA6AP0CW24 399 aaPredicted RBP23.62■■□□□ 1.37
SDC3-202ENST00000339394 PTPN1P18031 435 aaKnown RBP23.62■■□□□ 1.37
SDC3-202ENST00000339394 USP8P40818 1118 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 JAM2P57087 298 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 ROR1Q01973 937 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 CCDC142Q17RM4 750 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 SLC4A11Q8NBS3 891 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 B3GALNT2Q8NCR0 500 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 SPAG5Q96R06 1193 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 LPIN3Q9BQK8 851 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 CRTAC1Q9NQ79 661 aa23.62■■□□□ 1.37
SDC3-202ENST00000339394 PER2O15055 1255 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 ADH1AP07327 375 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 CPB1P15086 417 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 KLRC2P26717 231 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 CDR1P51861 262 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 ZNF132P52740 706 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 GPR17Q13304 367 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 RAB33AQ14088 237 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 SLC39A12Q504Y0 691 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 FAM171BQ6P995 826 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 ADGRD2Q7Z7M1 963 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 RBM23Q86U06 439 aaKnown RBP23.61■■□□□ 1.37
SDC3-202ENST00000339394 C12orf29Q8N999 325 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 RBBP8NLQ8NC74 664 aaPredicted RBP23.61■■□□□ 1.37
SDC3-202ENST00000339394 PKMYT1Q99640 499 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.61■■□□□ 1.37
SDC3-202ENST00000339394 WDR27A2RRH5 827 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms