RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NDE1Q9NXR1 346 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 MARCOQ9UEW3 520 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 SLC7A8Q9UHI5 535 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 PFDN1O60925 122 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ABHD2P08910 425 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ALCAMQ13740 583 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ZYXQ15942 572 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 HSF5Q4G112 596 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 SYCP2LQ5T4T6 812 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 SCUBE1Q8IWY4 988 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 JDP2Q8WYK2 163 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 DTNBP1Q96EV8 351 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 OXNAD1Q96HP4 312 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 AGBL1Q96MI9 1066 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 TTC25Q96NG3 672 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 FAM111AQ96PZ2 611 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 PHF12Q96QT6 1004 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 DDX4Q9NQI0 724 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 DDX18Q9NVP1 670 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ANGPTL2Q9UKU9 493 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 CFHP08603 1231 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 VAV1P15498 845 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 HIRAP54198 1017 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 CCNG2Q16589 344 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 C1orf146Q5VVC0 180 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ACAD10Q6JQN1 1059 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 CLEC4GQ6UXB4 293 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 RASSF3Q86WH2 238 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 EFCAB3Q8N7B9 438 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 GSTCDQ8NEC7 633 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 HSD17B14Q9BPX1 270 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 MECRQ9BV79 373 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 PSMC3IPQ9P2W1 217 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ATRNL1Q5VV63 1379 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 CLUHO75153 1309 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 ATF7P17544 494 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 DLG1Q12959 904 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 CEP128Q6ZU80 1094 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 ARMCX6Q7L4S7 300 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 PASD1Q8IV76 773 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 DDX1Q92499 740 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 PHACTR1Q9C0D0 580 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 SAE1Q9UBE0 346 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 RABGEF1Q9UJ41 708 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 C10orf71Q711Q0 1435 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 K7ENM7 598 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 DNALI1O14645 258 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 HNRNPCL1O60812 293 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 MXI1P50539 228 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 TDRPQ86YL5 185 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 RELL1Q8IUW5 271 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 ULK2Q8IYT8 1036 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 POMGNT1Q8WZA1 660 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 RBM17Q96I25 401 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 TSPYL2Q9H2G4 693 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 PPARGC1AQ9UBK2 798 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 COMMD3-BMI1R4GMX3 469 aa14.14□□□□□ -0.15
CCDC88C-201ENST00000331194 TXNDC9O14530 226 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 TM4SF1P30408 202 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 MAN1A1P33908 653 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CETN1Q12798 172 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SPDYAQ5MJ70 313 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 DAW1Q8N136 415 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ARHGAP18Q8N392 663 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CCDC110Q8TBZ0 833 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SNRNP27Q8WVK2 155 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PAFAH2Q99487 392 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 TMEM121Q9BTD3 319 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SMYD3Q9H7B4 428 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PCDHGB4Q9UN71 923 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PCDHGB5Q9Y5G0 923 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CNTNAP4Q9C0A0 1308 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 IGKV6D-41A0A0C4DH26 115 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 BUD23O43709 281 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ASLP04424 464 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ADRB2P07550 413 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CRABP2P29373 138 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 NT5C2P49902 561 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC18A1P54219 525 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 AQP4P55087 323 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 MFSD14BQ5SR56 506 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 FNBP1LQ5T0N5 605 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ANKRD22Q5VYY1 191 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 C3orf62Q6ZUJ4 267 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 LCA5Q86VQ0 697 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ABTB1Q969K4 478 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 LARSQ9P2J5 1176 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CDK5RAP2Q96SN8 1893 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CCDC195A0A1B0GUA6 201 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 MAGEB3O15480 346 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ITGA2BP08514 1039 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 GEMIN4P57678 1058 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PLCB3Q01970 1234 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 NCOA4Q13772 614 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 Q4G0T1 1027 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 NLRX1Q86UT6 975 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 CBWD2Q8IUF1 395 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 ST13P4Q8IZP2 240 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 BANPQ8N9N5 519 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms