RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 LINC01465Q8N7H1 131 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 TRIM11Q96F44 468 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 EIF2AQ9BY44 585 aaKnown RBP13.15□□□□□ -0.3
RNF4-201ENST00000314289 MRPL47Q9HD33 250 aaKnown RBP13.15□□□□□ -0.3
RNF4-201ENST00000314289 ZDHHC18Q9NUE0 388 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 PARVAQ9NVD7 372 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 GRHL1Q9NZI5 618 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 SCN4AP35499 1836 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 TRIP12Q14669 1992 aaPredicted RBP13.15□□□□□ -0.3
RNF4-201ENST00000314289 DCDC2CA8MYV0 355 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 NPTXRO95502 500 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 SHBGP04278 402 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 SKOR1P84550 965 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 FAM110CQ1W6H9 321 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 PTPN20Q4JDL3 420 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 KCNT1Q5JUK3 1230 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 OLFML2BQ68BL8 750 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 TRIM72Q6ZMU5 477 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 MREGQ8N565 214 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 TMEM35BQ8NCS4 154 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.15□□□□□ -0.3
RNF4-201ENST00000314289 SEC14L1Q92503 715 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 ELOVL4Q9GZR5 314 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 SNTG2Q9NY99 539 aa13.15□□□□□ -0.3
RNF4-201ENST00000314289 RAD23BP54727 409 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 KRT17Q04695 432 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 ZNF844Q08AG5 666 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 DHX34Q14147 1143 aaKnown RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 SURF1Q15526 300 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 RUFY4Q6ZNE9 571 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 C12orf29Q8N999 325 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 JOSD2Q8TAC2 188 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 LRRC45Q96CN5 670 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 KIF12Q96FN5 646 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 HPDLQ96IR7 371 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 LPIN3Q9BQK8 851 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SYNCQ9H7C4 482 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.14□□□□□ -0.31
RNF4-201ENST00000314289 RBM47A0AV96 593 aaKnown RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 NR1D1P20393 614 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 AKAP5P24588 427 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 RFC1P35251 1148 aaPredicted RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 MAP2K2P36507 400 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 ZNF157P51786 506 aaPredicted RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 C1QBPQ07021 282 aaKnown RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 TMEM132DQ14C87 1099 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SWT1Q5T5J6 900 aaKnown RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 CNPY4Q8N129 248 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 HEXIM2Q96MH2 286 aaKnown RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 CPXM1Q96SM3 734 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 KLK14Q9P0G3 267 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 ASIC3Q9UHC3 531 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 PCYOX1Q9UHG3 505 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 RASAL2Q9UJF2 1139 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 TLDC2A0PJX2 215 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 H0YGN5 161 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 FSCN2O14926 492 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 HCRTO43612 131 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 RHOT1Q8IXI2 618 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 GTF3C2Q8WUA4 911 aaPredicted RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 DNAJB3Q8WWF6 145 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 CABS1Q96KC9 395 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 ACAP3Q96P50 834 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SEMA4AQ9H3S1 761 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 ZWILCHQ9H900 591 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SAE1Q9UBE0 346 aaPredicted RBP13.14□□□□□ -0.31
RNF4-201ENST00000314289 NFS1Q9Y697 457 aa13.14□□□□□ -0.31
RNF4-201ENST00000314289 SCN1AP35498 2009 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 TMEM191CA6NGB0 347 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 ECEL1O95672 775 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 MCF2P10911 925 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 TAF1CQ15572 869 aaPredicted RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 CATSPER4Q7RTX7 472 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 SLC4A11Q8NBS3 891 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 CXorf38Q8TB03 319 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 C18orf25Q96B23 403 aaPredicted RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 ZMAT2Q96NC0 199 aaKnown RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 C10orf88Q9H8K7 445 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 SCINQ9Y6U3 715 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 FAM187AA6NFU0 413 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 E7EVH7 732 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 GRAP2O75791 330 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 IL18RAPO95256 599 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 MYCNP04198 464 aaPredicted RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 SMIM10L2AP0DMW4 78 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 SMIM10L2BP0DMW5 78 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 SLC1A1P43005 524 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 DYNLT1P63172 113 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 IFFO1Q0D2I5 559 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 IFT88Q13099 833 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 SESTD1Q86VW0 696 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 ZNF473Q8WTR7 871 aaKnown RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 TMEM40Q8WWA1 233 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 OSBPL8Q9BZF1 889 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 PPANQ9NQ55 473 aaKnown RBP13.13□□□□□ -0.31
RNF4-201ENST00000314289 DPP3Q9NY33 737 aa13.13□□□□□ -0.31
RNF4-201ENST00000314289 A0A1B0GUA9 196 aa13.12□□□□□ -0.31
RNF4-201ENST00000314289 M0QYV0 167 aa13.12□□□□□ -0.31
RNF4-201ENST00000314289 KRT1P04264 644 aa13.12□□□□□ -0.31
RNF4-201ENST00000314289 HSPA6P17066 643 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms