RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SNRPFP62306 86 aaKnown RBP18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF543Q08ER8 600 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 SGSM1Q2NKQ1 1148 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 B4GALNT2Q8NHY0 566 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 CDC42EP4Q9H3Q1 356 aaKnown RBP18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ZBTB39O15060 712 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 GLI1P08151 1106 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ACOT2P49753 483 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF235Q14590 738 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 KBTBD12Q3ZCT8 623 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 LRRN4CLQ8ND94 238 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 WNK4Q96J92 1243 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 HOXC10Q9NYD6 342 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 A0A1B0GW55 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 SASH3O75995 380 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L2P0CJ85 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L3P0CJ86 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L4P0CJ87 422 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L5P0CJ88 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L6P0CJ89 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4L7P0CJ90 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 GPSM2P81274 684 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 PTK2BQ14289 1009 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 MEI1Q5TIA1 1274 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 HORMAD1Q86X24 394 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 IL1RL2Q9HB29 575 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 DUX4Q9UBX2 424 aa18.09■□□□□ 0.49
SYNPO-201ENST00000307662 COPG1Q9Y678 874 aaKnown RBP18.09■□□□□ 0.49
SYNPO-201ENST00000307662 ADGRA3Q8IWK6 1321 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 PSMA4P25789 261 aaKnown RBP18.08■□□□□ 0.49
SYNPO-201ENST00000307662 KDELC2Q7Z4H8 507 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 CCDC103Q8IW40 242 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 RMDN1Q96DB5 314 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 FAM153AQ9UHL3 310 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 C15orf41Q9Y2V0 281 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 RXRBP28702 533 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 TNIP3Q96KP6 325 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 ZNF560Q96MR9 790 aa18.08■□□□□ 0.49
SYNPO-201ENST00000307662 SKAP2O75563 359 aaPredicted RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 DGAT1O75907 488 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 DLGAP3O95886 979 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 TWF2Q6IBS0 349 aaKnown RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 ACAD10Q6JQN1 1059 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 TNIP2Q8NFZ5 429 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 ILKAPQ9H0C8 392 aaPredicted RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 EXOSC4Q9NPD3 245 aaKnown RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 MTMR4Q9NYA4 1195 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 CHORDC1Q9UHD1 332 aaPredicted RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 FAM32AQ9Y421 112 aaKnown RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 CAMSAP1Q5T5Y3 1602 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 SETD1BQ9UPS6 1966 aaKnown RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 SOX11P35716 441 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 RECQLP46063 649 aaPredicted RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 TRIM65Q6PJ69 517 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 JADE3Q92613 823 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 TMEM120AQ9BXJ8 343 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 EPB41L4AQ9HCS5 686 aaPredicted RBP18.08■□□□□ 0.48
SYNPO-201ENST00000307662 F8VZ95 297 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF197O14709 1029 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 ECE2O60344 883 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 GLRA3O75311 464 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 CDKAL1Q5VV42 579 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 P3H2Q8IVL5 708 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 FBXO25Q8TCJ0 367 aa18.08■□□□□ 0.48
SYNPO-201ENST00000307662 PRKCBP05771 671 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 APOA4P06727 396 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PAX7P23759 505 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PON1P27169 355 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 CCDC60Q8IWA6 550 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 KCTD17Q8N5Z5 321 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 C17orf80Q9BSJ5 609 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 DALRD3Q5D0E6 543 aaKnown RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF668Q96K58 619 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PACSIN1Q9BY11 444 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PPRC1Q5VV67 1664 aaKnown RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 CCDC78A2IDD5 438 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PRR23D1E9PI22 279 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 C21orf2O43822 256 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 EFCAB14O75071 495 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 FKBP9O95302 570 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 HLA-DRAP01903 254 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 PRR23D2P0DMB1 279 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 RGS7P49802 495 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 OASLQ15646 514 aaKnown RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 FKBP9P1Q75LS8 142 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF34Q8IZ26 560 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 SPATA17Q96L03 361 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 BRD8Q9H0E9 1235 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 FSBPO95073 299 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 RASA2Q15283 850 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 SMTNL2Q2TAL5 461 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 TRMT5Q32P41 509 aaKnown RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 SPDYAQ5MJ70 313 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 BTBD8Q5XKL5 378 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 BNC2Q6ZN30 1099 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 LDHDQ86WU2 507 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 LRRC6Q86X45 466 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 CALML6Q8TD86 181 aa18.07■□□□□ 0.48
SYNPO-201ENST00000307662 FRMD8P1Q9BZ68 369 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-201ENST00000307662 EFCAB1Q9HAE3 211 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms