RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 CPXM1Q96SM3 734 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 TXLNGYQ9BZA5 131 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 RAB17Q9H0T7 212 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 NXF3Q9H4D5 531 aaKnown RBP6.94□□□□□ -1.3
USP47-201ENST00000305481 FAM114A2Q9NRY5 505 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 CHST7Q9NS84 486 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 IP6K2Q9UHH9 426 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 USTQ9Y2C2 406 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 R3HDM2Q9Y2K5 976 aaKnown RBP6.94□□□□□ -1.3
USP47-201ENST00000305481 SNX24Q9Y343 169 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 NME7Q9Y5B8 376 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 NFS1Q9Y697 457 aa6.94□□□□□ -1.3
USP47-201ENST00000305481 TP73O15350 636 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PSTPIP1O43586 416 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 HSF2BPO75031 334 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 STAU1O95793 577 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 MYL3P08590 195 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 RALAP11233 206 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 HOXC8P31273 242 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 RFC1P35251 1148 aaPredicted RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 RGS2P41220 211 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 YWHAEP62258 255 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 RBP5P82980 135 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PTPN11Q06124 597 aaPredicted RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 ADCY2Q08462 1091 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 INCA1Q0VD86 236 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 DCAF4L1Q3SXM0 396 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 CFAP58Q5T655 872 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 TMC3Q7Z5M5 1100 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 ARFGAP1Q8N6T3 406 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 C3orf20Q8ND61 904 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 EXOC4Q96A65 974 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 C18orf25Q96B23 403 aaPredicted RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 APBA2Q99767 749 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 HEMGNQ9BXL5 484 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 CYP3A43Q9HB55 503 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 TUBGCP4Q9UGJ1 667 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 MTUS1Q9ULD2 1270 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PTPN22Q9Y2R2 807 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PASKQ96RG2 1323 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 SCN1AP35498 2009 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 MICAL2O94851 1124 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 ERBB2P04626 1255 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 GPD2P43304 727 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 CPT1AP50416 773 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 NDST1P52848 882 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PURAQ00577 322 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 CDC42EP1Q00587 391 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 SNX1Q13596 522 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 SNX17Q15036 470 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 DNAJC24Q6P3W2 148 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 NT5DC4Q86YG4 428 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PLEKHA5Q9HAU0 1116 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 LRRC4CQ9HCJ2 640 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 KLHL11Q9NVR0 708 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP47-201ENST00000305481 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.93□□□□□ -1.3
USP47-201ENST00000305481 Q9Y3F1 56 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 TNPO2O14787 897 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 MED7O43513 233 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 AKAP5P24588 427 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 FNTAP49354 379 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 FSCN1Q16658 493 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 GLRA4Q5JXX5 417 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 UBXN11Q5T124 520 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 XYLT1Q86Y38 959 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 CD302Q8IX05 232 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 CCDC105Q8IYK2 499 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 OR2W6PQ8NHA6 318 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 EXD1Q8NHP7 514 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 JOSD2Q8TAC2 188 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 FBXO25Q8TCJ0 367 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 SLCO2A1Q92959 643 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 HEXIM2Q96MH2 286 aaKnown RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 ARHGAP39Q9C0H5 1083 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 RNF39Q9H2S5 420 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 EPB41L4BQ9H329 900 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 PSD3Q9NYI0 1048 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 BARX2Q9UMQ3 279 aaPredicted RBP6.93□□□□□ -1.3
USP47-201ENST00000305481 PLAAQ9Y263 795 aa6.93□□□□□ -1.3
USP47-201ENST00000305481 SIGLEC16A6NMB1 481 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 PODXLO00592 558 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 PPFIA2O75334 1257 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 PLTPP55058 493 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 INHBEP58166 350 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 CNGA2Q16280 664 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 SGO2Q562F6 1265 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 NOTUMQ6P988 496 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 FAM43BQ6ZT52 329 aaPredicted RBP6.92□□□□□ -1.3
USP47-201ENST00000305481 NIPA2Q8N8Q9 360 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 C12orf29Q8N999 325 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 UBA3Q8TBC4 463 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 SOCS4Q8WXH5 440 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 RNF25Q96BH1 459 aaPredicted RBP6.92□□□□□ -1.3
USP47-201ENST00000305481 FAM118BQ9BPY3 351 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 MRPL45Q9BRJ2 306 aaKnown RBP6.92□□□□□ -1.3
USP47-201ENST00000305481 OSBPL8Q9BZF1 889 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 DCLK3Q9C098 648 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 AP5M1Q9H0R1 490 aa6.92□□□□□ -1.3
USP47-201ENST00000305481 ZFYVE28Q9HCC9 887 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms