RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CACNA2D1P54289 1103 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 PKN1Q16512 942 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 CCNG2Q16589 344 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 EPC2Q52LR7 807 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 TTMPQ5BVD1 217 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 IZUMO2Q6UXV1 221 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 RUSC1Q9BVN2 902 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 TEX12Q9BXU0 123 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 LRCH1Q9Y2L9 728 aa13.41□□□□□ -0.26
COL3A1-201ENST00000304636 UBA6A0AVT1 1052 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 TMCC1O94876 653 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 GPD1P21695 349 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 GTF2H1P32780 548 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PLOD1Q02809 727 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 RASA2Q15283 850 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SMTNL2Q2TAL5 461 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SP8Q8IXZ3 490 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 NUP93Q8N1F7 819 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 DDHD1Q8NEL9 900 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PLEKHA5Q9HAU0 1116 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ABCF3Q9NUQ8 709 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 DCDC2Q9UHG0 476 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 NAALADL1Q9UQQ1 740 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 S100A5P33763 92 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 STX5Q13190 355 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 CDR2LQ86X02 465 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SCFD1Q8WVM8 642 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 CENPTQ96BT3 561 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ELMO2Q96JJ3 720 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PAFAH2Q99487 392 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 EGFL8Q99944 293 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SH2D3AQ9BRG2 576 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SARS2Q9NP81 518 aaKnown RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 TSC22D4Q9Y3Q8 395 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 IGSF9BQ9UPX0 1349 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 FAM237AA0A1B0GTK4 181 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 DFFAO00273 331 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 HNRNPRO43390 633 aaKnown RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 H2AFYO75367 372 aaKnown RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PDE5AO76074 875 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ITGA4P13612 1032 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ELF3P78545 371 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 RBP5P82980 135 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 TSPY1Q01534 308 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 FOXD4Q12950 439 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 MXRA8Q9BRK3 442 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ILKAPQ9H0C8 392 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 C10orf88Q9H8K7 445 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.4□□□□□ -0.26
COL3A1-201ENST00000304636 DGKIO75912 1065 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SLC34A1Q06495 639 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 MTM1Q13496 603 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 GIT2Q14161 759 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PDK1Q15118 436 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 TMCO5AQ8N6Q1 288 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PI4K2AQ9BTU6 479 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 NIF3L1Q9GZT8 377 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 RUBCNLQ9H714 662 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 ARHGEF38Q9NXL2 777 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 PRR12Q9ULL5 1215 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 SATB2Q9UPW6 733 aa13.4□□□□□ -0.26
COL3A1-201ENST00000304636 CYP11B1P15538 503 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 MUTP22033 750 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 MXD4Q14582 209 aaPredicted RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 KBTBD12Q3ZCT8 623 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PREPLQ4J6C6 727 aaPredicted RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 GPR141Q7Z602 305 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 CLEC10AQ8IUN9 316 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 M0R3G1 203 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 MED24O75448 989 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PAX7P23759 505 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PDAP1Q13442 181 aaKnown RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 LBRQ14739 615 aaKnown RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 USP6NLQ92738 828 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 ARHGEF1Q92888 912 aaKnown RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 MED15Q96RN5 788 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PRPF18Q99633 342 aaKnown RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 ANKEF1Q9NU02 776 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 AGAP1Q9UPQ3 857 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 CLPTM1O96005 669 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PSMC3P17980 439 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 NFKBIAP25963 317 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 CASP4P49662 377 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 MCL1Q07820 350 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 TFDP3Q5H9I0 405 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 EFHC1Q5JVL4 640 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 KIAA0895Q8NCT3 520 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 TMEM143Q96AN5 459 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 STAT5BP51692 787 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 EXD1Q8NHP7 514 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 SNRNP27Q8WVK2 155 aaKnown RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 APBB2Q92870 758 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PPP1R2P1Q96PQ5 205 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 BTBD10Q9BSF8 475 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 ATP11BQ9Y2G3 1177 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 ADGRA3Q8IWK6 1321 aa13.39□□□□□ -0.27
COL3A1-201ENST00000304636 COL3A1P02461 1466 aaPredicted RBP13.39□□□□□ -0.27
COL3A1-201ENST00000304636 PIK3CDO00329 1044 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 MSH4O15457 936 aa13.38□□□□□ -0.27
COL3A1-201ENST00000304636 TFRCP02786 760 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms