RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZNF806P0C7X5 589 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 ANK1P16157 1881 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 AVPR1AP37288 418 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 POU5F1Q01860 360 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CACNB1Q02641 598 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 TNK2Q07912 1038 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 MGAT5BQ3V5L5 792 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 ARSHQ5FYA8 562 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 WDR44Q5JSH3 913 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 MCTP1Q6DN14 999 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 GPBP1Q86WP2 473 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 DCP1BQ8IZD4 617 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CMTM8Q8IZV2 173 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CAMKK1Q8N5S9 505 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 MYCT1Q8N699 235 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 TTC8Q8TAM2 541 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CALML4Q96GE6 196 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CHAMP1Q96JM3 812 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 LPIN3Q9BQK8 851 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 CPSF3Q9UKF6 684 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 ANGPTL2Q9UKU9 493 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 SLC8A2Q9UPR5 921 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 PCDHGA5Q9Y5G8 931 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 DENND4CQ5VZ89 1909 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 SCN1AP35498 2009 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 NPHP3-ACAD11A0A0J9YXS1 232 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 PPEF2O14830 753 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 GDF9O60383 454 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 EPN2O95208 641 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 RAP1GAPP47736 663 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 TAF6P49848 677 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 ZNF131P52739 623 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 CYP4F8P98187 520 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 TMEM196Q5HYL7 178 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 SLFN12LQ6IEE8 588 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 GPIHBP1Q8IV16 184 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 TMEM130Q8N3G9 435 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 OR10T2Q8NGX3 314 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 PLIN2Q99541 437 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 REEP2Q9BRK0 252 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 CCSER1Q9C0I3 900 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 IL21Q9HBE4 155 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 GKN1Q9NS71 199 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 TCHHQ07283 1943 aa15.97■□□□□ 0.15
CCDC88B-201ENST00000301897 CYB561D2O14569 222 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 TRDMT1O14717 391 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 AXIN1O15169 862 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 EXTL3O43909 919 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 TRAK2O60296 914 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 KRT18P05783 430 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 CCDC192P0DO97 292 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 ATF6P18850 670 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 UBA7P41226 1012 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 BFSP1Q12934 665 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 RUNX3Q13761 415 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 FBXO43Q4G163 708 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 ERICH6BQ5W0A0 696 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 CC2D1AQ6P1N0 951 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 FAM83CQ9BQN1 747 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 PYM1Q9BRP8 204 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 SLC46A2Q9BY10 475 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 ARRDC1-AS1Q9H2J1 176 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 C2orf42Q9NWW7 574 aa15.96■□□□□ 0.15
CCDC88B-201ENST00000301897 CFAP47Q6ZTR5 3102 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 ATG2BQ96BY7 2078 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 TBCAO75347 108 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 BMP15O95972 392 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 NFICP08651 508 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 HAPLN1P10915 354 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 DRD1P21728 446 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 GTF2BQ00403 316 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 PDGFRLQ15198 375 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 NFE2Q16621 373 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 SV2CQ496J9 727 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 NT5DC4Q86YG4 428 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 MRPS31Q92665 395 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 ZC3H10Q96K80 434 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 ZNF560Q96MR9 790 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 TDP1Q9NUW8 608 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 UXTQ9UBK9 157 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 PCDHB5Q9Y5E4 795 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 FAM208BQ5VWN6 2430 aa15.95■□□□□ 0.14
CCDC88B-201ENST00000301897 CACNA1GO43497 2377 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 CSH1P0DML2 217 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 CSH2P0DML3 217 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 KCNA4P22459 653 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 PNPLA4P41247 253 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 NLRP12P59046 1061 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 SHC2P98077 582 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 TSPY1Q01534 308 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 ZNF268Q14587 947 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 POSTNQ15063 836 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 SF3A2Q15428 464 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 ADALQ6DHV7 355 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 MAB21L3Q8N8X9 362 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 CCDC26Q8TAB7 109 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 GIPC2Q8TF65 315 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 KIF2CQ99661 725 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 VPS45Q9NRW7 570 aa15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 DPP3Q9NY33 737 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms