RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PKD1L3Q7Z443 1732 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 FAM205CA6NFA0 338 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SGK1O00141 431 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KLF11O14901 512 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 LRRN2O75325 713 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CYP11B2P19099 503 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 GCNT1Q02742 428 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ATP1A4Q13733 1029 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 COL9A3Q14050 684 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 PDK4Q16654 411 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SPOPLQ6IQ16 392 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RINT1Q6NUQ1 792 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NIPA1Q7RTP0 329 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RYBPQ8N488 228 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 SDR42E1Q8WUS8 393 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CYGBQ8WWM9 190 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 POP5Q969H6 163 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 ZFRQ96KR1 1074 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 FAM129BQ96TA1 746 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 EXOSC4Q9NPD3 245 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 MRPL39Q9NYK5 338 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 CNTNAP4Q9C0A0 1308 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RGS5O15539 181 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TLR2O60603 784 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 FCER1AP12319 257 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 C4BPBP20851 252 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TBXAS1P24557 533 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 TTKP33981 857 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 BCAP31P51572 246 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SLC34A1Q06495 639 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KLRC3Q07444 240 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 GALNTL6Q49A17 601 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KLC3Q6P597 504 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NEK10Q6ZWH5 1172 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CHURC1Q8WUH1 139 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CAPSLQ8WWF8 208 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 LRRC39Q96DD0 335 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MTBPQ96DY7 904 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 HPS4Q9NQG7 708 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ZDHHC18Q9NUE0 388 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TMOD4Q9NZQ9 345 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 DLGAP2Q9P1A6 1054 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 WDR35Q9P2L0 1181 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MRPL11Q9Y3B7 192 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 KCPQ6ZWJ8 1503 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 BAIAP3O94812 1187 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 KLHL2O95198 593 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SNHG28P0DPA3 235 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 EZH2Q15910 746 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 HADHQ16836 314 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 TRAPPC3LQ5T215 181 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ANKS1BQ7Z6G8 1248 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RCOR2Q8IZ40 523 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 EXD1Q8NHP7 514 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 FBXO25Q8TCJ0 367 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SCFD1Q8WVM8 642 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 GPKOWQ92917 476 aaPredicted RBP eCLIP6.69□□□□□ -1.34
VPS35-201ENST00000299138 EXT2Q93063 718 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CMTM5Q96DZ9 223 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 HIC2Q96JB3 615 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 C8orf4Q9NR00 106 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 PKD2L2Q9NZM6 624 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 APOBEC2Q9Y235 224 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 ATF5Q9Y2D1 282 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 MT-ND3P03897 115 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 S100A6P06703 90 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 PLS3P13797 630 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 PON1P27169 355 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CXCR5P32302 372 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 JAM2P57087 298 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RUNX1T1Q06455 604 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ZNF543Q08ER8 600 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RIPPLY1Q0D2K3 151 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TFDP2Q14188 446 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 SLC29A2Q14542 456 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RSBN1Q5VWQ0 802 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 CIAPIN1Q6FI81 312 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 MIS18BP1Q6P0N0 1132 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ZNF571Q7Z3V5 609 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 FRMD6Q96NE9 622 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 BTBD9Q96Q07 612 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 C1orf112Q9NSG2 853 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 NSMCE4AQ9NXX6 385 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.69□□□□□ -1.345e-8■□□□□ 10.2
VPS35-201ENST00000299138 RASA4BC9J798 803 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RASA4O43374 803 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TRIM13O60858 407 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ACTN1P12814 892 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CA4P22748 312 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 COPB2P35606 906 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 IL12RB1P42701 662 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 ACADVLP49748 655 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 RRP1BQ14684 758 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 DRAP1Q14919 205 aaPredicted RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 SUZ12Q15022 739 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 RARS2Q5T160 578 aaKnown RBP6.69□□□□□ -1.34
VPS35-201ENST00000299138 C11orf74Q86VG3 221 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 CHSY1Q86X52 802 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TRIM50Q86XT4 487 aa6.69□□□□□ -1.34
VPS35-201ENST00000299138 TMPRSS6Q8IU80 811 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms