RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SEMA4DQ92854 862 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 PPP2R3CQ969Q6 453 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 CCDC127Q96BQ5 260 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 MTBPQ96DY7 904 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 SAE1Q9UBE0 346 aaPredicted RBP14.18□□□□□ -0.14
SKA3-201ENST00000298260 ZNF148Q9UQR1 794 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 F5H6K3 240 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 ATF7P17544 494 aaPredicted RBP14.18□□□□□ -0.14
SKA3-201ENST00000298260 KLRC2P26717 231 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 HPCAP84074 193 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 UBAP2LQ14157 1087 aaKnown RBP14.18□□□□□ -0.14
SKA3-201ENST00000298260 ACAP1Q15027 740 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 R3HDM1Q15032 1099 aaKnown RBP14.18□□□□□ -0.14
SKA3-201ENST00000298260 NLRX1Q86UT6 975 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 CCDC89Q8N998 374 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 CCDC110Q8TBZ0 833 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 FIZ1Q96SL8 496 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 ARHGEF38Q9NXL2 777 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 SERPINA10Q9UK55 444 aa14.18□□□□□ -0.14
SKA3-201ENST00000298260 BOLA2-SMG1P6H3BVE0 249 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 PDLIM1O00151 329 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 VILLO15195 856 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 CYP11B1P15538 503 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 HOXA7P31268 230 aaPredicted RBP14.17□□□□□ -0.14
SKA3-201ENST00000298260 NRLP54845 237 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 ZNF543Q08ER8 600 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 MED21Q13503 144 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 RALGPS1Q5JS13 557 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 CES4AQ5XG92 561 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 SLC26A7Q8TE54 656 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 GRK7Q8WTQ7 553 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 LENG9Q96B70 501 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 HSPBAP1Q96EW2 488 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 TTC25Q96NG3 672 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 GCNAQ96QF7 691 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 TOPORSQ9NS56 1045 aaPredicted RBP14.17□□□□□ -0.14
SKA3-201ENST00000298260 WRAP73Q9P2S5 460 aaPredicted RBP14.17□□□□□ -0.14
SKA3-201ENST00000298260 GTF3C4Q9UKN8 822 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 TBC1D30Q9Y2I9 924 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 BTAF1O14981 1849 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 MSH4O15457 936 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 AP2B1P63010 937 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 MAP3K10Q02779 954 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 QRICH1Q2TAL8 776 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 Q4G0T1 1027 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 C1orf220Q5T0J3 134 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 ZNF720Q7Z2F6 126 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 PI4K2AQ9BTU6 479 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 RTFDC1Q9BY42 306 aaPredicted RBP14.17□□□□□ -0.14
SKA3-201ENST00000298260 GRIP2Q9C0E4 1043 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 PSMC3IPQ9P2W1 217 aaPredicted RBP14.17□□□□□ -0.14
SKA3-201ENST00000298260 CLUHO75153 1309 aa14.17□□□□□ -0.14
SKA3-201ENST00000298260 PRR5-ARHGAP8B1AHC4 643 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ZBTB5O15062 677 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 CFHP08603 1231 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ACTR3P61158 418 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ARHGAP8P85298 464 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 CAV1Q03135 178 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ASPHQ12797 758 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 MAP7Q14244 749 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 MMEL1Q495T6 779 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 POTEAQ6S8J7 498 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 PRPF39Q86UA1 669 aaKnown RBP14.16□□□□□ -0.14
SKA3-201ENST00000298260 PASD1Q8IV76 773 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 METTL25Q8N6Q8 603 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ERMNQ8TAM6 284 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 PAFAH2Q99487 392 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 TMEM121Q9BTD3 319 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 PARVGQ9HBI0 331 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 ZNF711Q9Y462 761 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.16□□□□□ -0.14
SKA3-201ENST00000298260 KRT5P13647 590 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 VCLP18206 1134 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 KLF1Q13351 362 aaPredicted RBP14.16□□□□□ -0.14
SKA3-201ENST00000298260 ANKRD22Q5VYY1 191 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 PDSS2Q86YH6 399 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 SERAC1Q96JX3 654 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 CYP4F11Q9HBI6 524 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 USP29Q9HBJ7 922 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 PLA2G4CQ9UP65 541 aa14.16□□□□□ -0.14
SKA3-201ENST00000298260 DDX60LQ5H9U9 1706 aaKnown RBP14.15□□□□□ -0.14
SKA3-201ENST00000298260 MEIS2O14770 477 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 CIB2O75838 187 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 FAM155BO75949 473 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 PLCB3Q01970 1234 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 PDK3Q15120 406 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 CDHR3Q6ZTQ4 885 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 ACAD11Q709F0 780 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 ARID3BQ8IVW6 561 aaPredicted RBP14.15□□□□□ -0.14
SKA3-201ENST00000298260 PRPF31Q8WWY3 499 aaKnown RBP14.15□□□□□ -0.14
SKA3-201ENST00000298260 ACAP3Q96P50 834 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 OLFM3Q96PB7 478 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 WDR83Q9BRX9 315 aaKnown RBP14.15□□□□□ -0.14
SKA3-201ENST00000298260 KLHL4Q9C0H6 718 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 LIN28AQ9H9Z2 209 aaKnown RBP14.15□□□□□ -0.14
SKA3-201ENST00000298260 DMAC2Q9NW81 257 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 RABGEF1Q9UJ41 708 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 AK5Q9Y6K8 562 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 A0A1B0GTW7 788 aa14.15□□□□□ -0.14
SKA3-201ENST00000298260 CAPN8A6NHC0 703 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms