RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ADCY1Q08828 1119 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 SMTNL2Q2TAL5 461 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 MFSD5Q6N075 450 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 LRRC34Q8IZ02 419 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 STMN4Q9H169 189 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 CDT1Q9H211 546 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 FZD8Q9H461 694 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 SAE1Q9UBE0 346 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 AGTPBP1Q9UPW5 1226 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 MGAMO43451 1857 aa19.4■□□□□ 0.7
SHKBP1-201ENST00000291842 GPR25O00155 361 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 ATP2C2O75185 946 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 RFC1P35251 1148 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CETN2P41208 172 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 MBTD1Q05BQ5 628 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 PTPN20Q4JDL3 420 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CYP4F22Q6NT55 531 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 PPP1R2P3Q6NXS1 205 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 SPOCD1Q6ZMY3 1216 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 TAOK1Q7L7X3 1001 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 YTHDF3Q7Z739 585 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CYP4X1Q8N118 509 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 C3orf20Q8ND61 904 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 RBM41Q96IZ5 413 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 MPHOSPH6Q99547 160 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 ZWILCHQ9H900 591 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 GAS2O43903 313 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CETPP11597 493 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 DYNLT1P63172 113 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CAV1Q03135 178 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CNGA2Q16280 664 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 KCNT1Q5JUK3 1230 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 PPP1R15BQ5SWA1 713 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CCDC121Q6ZUS5 278 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 JOSD2Q8TAC2 188 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 OSBPL7Q9BZF2 842 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 SMARCAD1Q9H4L7 1026 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 C10orf88Q9H8K7 445 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 RPF1Q9H9Y2 349 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 HMGXB4Q9UGU5 601 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 SIX4Q9UIU6 781 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 CEP83Q9Y592 693 aa19.39■□□□□ 0.69
SHKBP1-201ENST00000291842 DNAJC25-GNG10A0A024R161 153 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 H0YHG0 523 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 TJP3O95049 919 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 CPP00450 1065 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 VIMP08670 466 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 EIF4BP23588 611 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 PLCB3Q01970 1234 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 TFDP1Q14186 410 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 SURF1Q15526 300 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 KCNV1Q6PIU1 500 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 TAX1BP1Q86VP1 789 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 ANKRD13AQ8IZ07 590 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 ANKRD42Q8N9B4 389 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 CPB2Q96IY4 423 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 SERPINB12Q96P63 405 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 RBM15Q96T37 977 aaKnown RBP eCLIP19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 SDCBP2Q9H190 292 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 KCNK9Q9NPC2 374 aa19.38■□□□□ 0.69
SHKBP1-201ENST00000291842 GOLGA6L7A0A1B0GV03 622 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 ARSEP51690 589 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 HIBCHQ6NVY1 386 aaPredicted RBP19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 DPH6Q7L8W6 267 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 EMC1Q8N766 993 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 C1orf127Q8N9H9 656 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 OPTNQ96CV9 577 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 TMEM121Q9BTD3 319 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 SMYD3Q9H7B4 428 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 EFCC1Q9HA90 598 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 GGA2Q9UJY4 613 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 PCDHGC3Q9UN70 934 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 TMEM120BA0PK00 339 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 SPDYE5A6NIY4 337 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 LACTBL1A8MY62 500 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 B4GALT4O60513 344 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 PSMA2P25787 234 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 TWNKQ96RR1 684 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 ZNF518BQ9C0D4 1074 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 RNF181Q9P0P0 153 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 PPME1Q9Y570 386 aa19.37■□□□□ 0.69
SHKBP1-201ENST00000291842 hCG_1818297A0A087WSY0 165 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 CXCL11O14625 94 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 HBP1O60381 514 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 IFNB1P01574 187 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 ITGB3P05106 788 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 KRT3P12035 628 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 SLC20A2Q08357 652 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 GPS1Q13098 491 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 MOGSQ13724 837 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 PIGHQ14442 188 aaPredicted RBP19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 TFDP3Q5H9I0 405 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 ZNF667Q5HYK9 610 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 JADE1Q6IE81 842 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 CAPN12Q6ZSI9 719 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 KIAA0319LQ8IZA0 1049 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 CPXM1Q96SM3 734 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 IFT122Q9HBG6 1241 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 A0A087WZ62 844 aa19.36■□□□□ 0.69
SHKBP1-201ENST00000291842 CYP2C8P10632 490 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms