RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GRK7Q8WTQ7 553 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 SNCAIPQ9Y6H5 919 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 CCT8L1PA6NM43 557 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 ASS1P00966 412 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 RPS12P25398 132 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 PKN2Q16513 984 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 ZBTB8OSQ8IWT0 167 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 HEXIM2Q96MH2 286 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 SLITRK1Q96PX8 696 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 APOL6Q9BWW8 343 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 A0A1W2PPM1 405 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 STAM2O75886 525 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 LDHAP00338 332 aaKnown RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 KLF1Q13351 362 aaPredicted RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 ANKRD22Q5VYY1 191 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 PLEKHA7Q6IQ23 1121 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 XRRA1Q6P2D8 792 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 TRMT10CQ7L0Y3 403 aaKnown RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 CPXM1Q96SM3 734 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 EFCC1Q9HA90 598 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 AVENQ9NQS1 362 aaPredicted RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 NKIRAS1Q9NYS0 192 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 GPRC5DQ9NZD1 345 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 RBBP6Q7Z6E9 1792 aaKnown RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 YY1P25490 414 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 OTUD4Q01804 1114 aaKnown RBP17.54■□□□□ 0.4
VPS54-201ENST00000272322 PTP4A2Q12974 167 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 PTK6Q13882 451 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 ATF7IP2Q5U623 682 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 SPOCD1Q6ZMY3 1216 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 FAM71DQ8N9W8 422 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 NIF3L1Q9GZT8 377 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 IP6K2Q9UHH9 426 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 AGAP1Q9UPQ3 857 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 CEP83Q9Y592 693 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 NR2E3Q9Y5X4 410 aa17.54■□□□□ 0.4
VPS54-201ENST00000272322 A0A087WZ62 844 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 TMEM191CA6NGB0 347 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 H0YCG3 227 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 PMM2O15305 246 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 ZNF286BP0CG31 522 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 CCNG2Q16589 344 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 LBX2Q6XYB7 198 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 RFX6Q8HWS3 928 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 PIWIL1Q96J94 861 aaKnown RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 FAM81BQ96LP2 452 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 ACO2Q99798 780 aaKnown RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 FDXACB1Q9BRP7 624 aaPredicted RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 C15orf59Q2T9L4 293 aaPredicted RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 GLRA4Q5JXX5 417 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 FAM160B1Q5W0V3 765 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 C1orf228Q6PIY5 440 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 RHBDF2Q6PJF5 856 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 BRSK2Q8IWQ3 736 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 SULF1Q8IWU6 871 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 CCT6BQ92526 530 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 TRIM11Q96F44 468 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 CXCL16Q9H2A7 254 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 SCINQ9Y6U3 715 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 ATP8B3O60423 1300 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 TCRBV7S3A2A0A539 114 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 EIF4E1BA6NMX2 242 aaKnown RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 LIASO43766 372 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 ZC3H11AO75152 810 aaKnown RBP eCLIP17.53■□□□□ 0.46e-8■■■■■ 27.4
VPS54-201ENST00000272322 TBXAS1P24557 533 aaPredicted RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 KCNJ2P63252 427 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 APOBEC3FQ8IUX4 373 aaKnown RBP17.53■□□□□ 0.4
VPS54-201ENST00000272322 KIRREL3Q8IZU9 778 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 KCTD6Q8NC69 237 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 FAM49BQ9NUQ9 324 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 HES2Q9Y543 173 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 HEY1Q9Y5J3 304 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 NFASCO94856 1347 aa17.53■□□□□ 0.4
VPS54-201ENST00000272322 M0QYV0 167 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 FZD9O00144 591 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 GPR25O00155 361 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 OGTO15294 1046 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 AVILO75366 819 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 TJP3O95049 919 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 FSBPO95073 299 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 TNNC2P02585 160 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 RPSAP08865 295 aaKnown RBP17.52■□□□□ 0.4
VPS54-201ENST00000272322 MYBL1P10243 752 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 CA4P22748 312 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 CYB5D1Q6P9G0 228 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 TRPM8Q7Z2W7 1104 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 C7orf31Q8N865 590 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 NEDD9Q14511 834 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 EXD1Q8NHP7 514 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.52■□□□□ 0.4
VPS54-201ENST00000272322 PRCCQ92733 491 aaPredicted RBP17.52■□□□□ 0.4
VPS54-201ENST00000272322 MAGEB5Q9BZ81 275 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 ADAMTS5Q9UNA0 930 aa17.52■□□□□ 0.4
VPS54-201ENST00000272322 A8MUI8 341 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 HCRTO43612 131 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 NEFHP12036 1026 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 FAM102AQ5T9C2 384 aaPredicted RBP17.52■□□□□ 0.39
VPS54-201ENST00000272322 ZNF677Q86XU0 584 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 TEX2Q8IWB9 1127 aa17.52■□□□□ 0.39
VPS54-201ENST00000272322 FUKQ8N0W3 1084 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms