RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 C3orf20Q8ND61 904 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 ART4Q93070 314 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 RBM41Q96IZ5 413 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 OSBPL8Q9BZF1 889 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CHST7Q9NS84 486 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CWC15Q9P013 229 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 ITGA11Q9UKX5 1188 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 C2CD2Q9Y426 696 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 O00370 1275 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 CDH8P55286 799 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 CDC42EP1Q00587 391 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 IFFO1Q0D2I5 559 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 KLF1Q13351 362 aaPredicted RBP13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 SLMAPQ14BN4 828 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 DCAF4L1Q3SXM0 396 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 PPP1R15BQ5SWA1 713 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 ZFYVE27Q5T4F4 411 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 LRRC38Q5VT99 294 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 ILDR2Q71H61 639 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 ATL2Q8NHH9 583 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 CXorf38Q8TB03 319 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 HPDLQ96IR7 371 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 HEMGNQ9BXL5 484 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 SDCBP2Q9H190 292 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 PABPC3Q9H361 631 aaKnown RBP13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 SMYD3Q9H7B4 428 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 WHRNQ9P202 907 aa13.69□□□□□ -0.22
SPTLC1-201ENST00000262554 CILPO75339 1184 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 IRAK1P51617 712 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 HNRNPH2P55795 449 aaKnown RBP13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 GNGT1P63211 74 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 RBP5P82980 135 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 PTK6Q13882 451 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 CCNG2Q16589 344 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 CYP4A22Q5TCH4 519 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 AGBL2Q5U5Z8 902 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 EMC10Q5UCC4 262 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 DENND2CQ68D51 928 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 LRRC31Q6UY01 552 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 SLC4A11Q8NBS3 891 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 ATG4AQ8WYN0 398 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 TMEM176AQ96HP8 235 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 CCDC114Q96M63 670 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 HERPUD2Q9BSE4 406 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 SETD4Q9NVD3 440 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 DPP3Q9NY33 737 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 ASIC3Q9UHC3 531 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 AGAP1Q9UPQ3 857 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 RALGAPA2Q2PPJ7 1873 aa13.68□□□□□ -0.22
SPTLC1-201ENST00000262554 DYNC1LI2O43237 492 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ITIH2P19823 946 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 GRM5P41594 1212 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 PTPN11Q06124 597 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ZNF252P-AS1Q0IIN9 211 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 NFX1Q12986 1120 aaKnown RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 KRT71Q3SY84 523 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 TTC39CQ8N584 583 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ARFGAP2Q8N6H7 521 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 NIPA2Q8N8Q9 360 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 SNF8Q96H20 258 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 GCOM2Q9BZD3 368 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 FAM124BQ9H5Z6 455 aaPredicted RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 DDX56Q9NY93 547 aaKnown RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 WDR35Q9P2L0 1181 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 NRCAMQ92823 1304 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 A6NJR5 290 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 SIGLEC16A6NMB1 481 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 F8VP50 259 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ADCY6O43306 1168 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 STAU1O95793 577 aaKnown RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 KRT1P04264 644 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 NUDT17P0C025 328 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 KRT3P12035 628 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ATP1A2P50993 1020 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 COPS2P61201 443 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 IRF5Q13568 498 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 KIZQ2M2Z5 673 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 PTPN20Q4JDL3 420 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 HOOK3Q86VS8 718 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 KIF12Q96FN5 646 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 SLITRK1Q96PX8 696 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ELOVL4Q9GZR5 314 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 ADAMTS10Q9H324 1103 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 SYNCQ9H7C4 482 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 BCCIPQ9P287 314 aaKnown RBP eCLIP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 CPA4Q9UI42 421 aa13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 R3HDM2Q9Y2K5 976 aaKnown RBP13.67□□□□□ -0.22
SPTLC1-201ENST00000262554 TRIP11Q15643 1979 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 GOLGA8SH3BPF8 625 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 EIF3HO15372 352 aaKnown RBP eCLIP13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 TJP3O95049 919 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 NPTXRO95502 500 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 SMIM10L2AP0DMW4 78 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 SMIM10L2BP0DMW5 78 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 VDRP11473 427 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 RARGP13631 454 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 FGFR4P22455 802 aa13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 GSCP56915 257 aaPredicted RBP13.66□□□□□ -0.22
SPTLC1-201ENST00000262554 PSMC1P62191 440 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms