RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PXMP2Q9NR77 195 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 NOP53Q9NZM5 478 aaKnown RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 ZMYND8Q9ULU4 1186 aaPredicted RBP10.61□□□□□ -0.71
LIG3-201ENST00000262327 NUB1Q9Y5A7 615 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 PCDHA10Q9Y5I2 948 aa10.61□□□□□ -0.71
LIG3-201ENST00000262327 LRRD1A4D1F6 860 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 SGK1O00141 431 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 MAPK13O15264 365 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 SSTR1P30872 391 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 CENPCQ03188 943 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 RBBP5Q15291 538 aaKnown RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 SH3D19Q5HYK7 790 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 SCARA5Q6ZMJ2 495 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 TRABD2AQ86V40 505 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 ANKRD35Q8N283 1001 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 ATG4CQ96DT6 458 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 IFT74Q96LB3 600 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 FBXL18Q96ME1 805 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 TARS2Q9BW92 718 aaKnown RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 MOV10L1Q9BXT6 1211 aaKnown RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 AFG3L2Q9Y4W6 797 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 CSADQ9Y600 493 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 SNCAIPQ9Y6H5 919 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 PAPPA2Q9BXP8 1791 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 PEX10O60683 326 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 LYPLA2O95372 231 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 CYP1A1P04798 512 aaPredicted RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 SLC1A1P43005 524 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 LACTBP83111 547 aaPredicted RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 PRKCEQ02156 737 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 OGDHQ02218 1023 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 CUL2Q13617 745 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 STAT4Q14765 748 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 ASRGL1Q7L266 308 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 MCF2L2Q86YR7 1114 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 MAIP1Q8WWC4 291 aa10.6□□□□□ -0.71
LIG3-201ENST00000262327 MAK16Q9BXY0 300 aaKnown RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 AVENQ9NQS1 362 aaPredicted RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 AGO2Q9UKV8 859 aaKnown RBP10.6□□□□□ -0.71
LIG3-201ENST00000262327 POLR2AP24928 1970 aaKnown RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 UNCXA6NJT0 531 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 TTLL13PA6NNM8 815 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 LIASO43766 372 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 COQ9O75208 318 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 UNC5CO95185 931 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ASMTLO95671 621 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 EDN1P05305 212 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ACO1P21399 889 aaKnown RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 EPHB2P29323 1055 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ERFP50548 548 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ATP11AP98196 1134 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ORC1Q13415 861 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 RIPK1Q13546 671 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 VGLL4Q14135 290 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 DCUN1D2Q6PH85 259 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ZBTB33Q86T24 672 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ABRAQ8N0Z2 381 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ZWILCHQ9H900 591 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 NPHS2Q9NP85 383 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 TJP2Q9UDY2 1190 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 LGALS13Q9UHV8 139 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 NUMBLQ9Y6R0 609 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 PHIPQ8WWQ0 1821 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ENO4A6NNW6 628 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 PMM2O15305 246 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 CST3P01034 146 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 C4BPAP04003 597 aaKnown RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 NR3C2P08235 984 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 GTF2H1P32780 548 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 MAN1A1P33908 653 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 JAK3P52333 1124 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ZNF252P-AS1Q0IIN9 211 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 TBC1D25Q3MII6 688 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ZACNQ401N2 412 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 EAPPQ56P03 285 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 ANKRD22Q5VYY1 191 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 LVRNQ6Q4G3 990 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 PPP1R21Q6ZMI0 780 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SYDE1Q6ZW31 735 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 USP37Q86T82 979 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ZCCHC9Q8N567 271 aaKnown RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 FEZF2Q8TBJ5 459 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 FBF1Q8TES7 1133 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 LRRC37BQ96QE4 947 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SMC6Q96SB8 1091 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 RPAP3Q9H6T3 665 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 SLC38A10Q9HBR0 1119 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 ANKEF1Q9NU02 776 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 RBAKQ9NYW8 714 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 DNALI1O14645 258 aaPredicted RBP10.59□□□□□ -0.71
LIG3-201ENST00000262327 GM2AP17900 193 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 KRT4P19013 534 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 GDF10P55107 478 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 KRT76Q01546 638 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 CAV1Q03135 178 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 TFDP1Q14186 410 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 SETDB1Q15047 1291 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 WDR72Q3MJ13 1102 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 MSS51Q4VC12 460 aa10.59□□□□□ -0.71
LIG3-201ENST00000262327 HHATQ5VTY9 493 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms