RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MMS22LQ6ZRQ5 1243 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 TMEM161BQ8NDZ6 487 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 PPHLN1Q8NEY8 458 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 LRRC8CQ8TDW0 803 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 RNPC3Q96LT9 517 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 ACO2Q99798 780 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 DYRK4Q9NR20 520 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 TLR8Q9NR97 1041 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 KPNA7A9QM74 516 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 PMM2O15305 246 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 KRT14P02533 472 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 MYL6P60660 151 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 STAT4Q14765 748 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CTXN3Q4LDR2 81 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 METTL3Q86U44 580 aaKnown RBP14.34□□□□□ -0.11
LDLR-201ENST00000252444 SPATA20Q8TB22 786 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 PARD3BQ8TEW8 1205 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CBWD1Q9BRT8 395 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 CDH9Q9ULB4 789 aa14.34□□□□□ -0.11
LDLR-201ENST00000252444 TRPA1O75762 1119 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 GUCY2FP51841 1108 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 ANKRD20A3Q5VUR7 823 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 MTMR12Q9C0I1 747 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 DDX20Q9UHI6 824 aaKnown RBP14.33□□□□□ -0.12
LDLR-201ENST00000252444 A0A087WWV3 80 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 ENC1O14682 589 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 PRKAR2AP13861 404 aaKnown RBP14.33□□□□□ -0.12
LDLR-201ENST00000252444 GRK4P32298 578 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 PLTPP55058 493 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 DHX9Q08211 1270 aaKnown RBP14.33□□□□□ -0.12
LDLR-201ENST00000252444 SLC7A14Q8TBB6 771 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 DNAJC19Q96DA6 116 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 OR6C75A6NL08 312 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 RASGRF2O14827 1237 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 LGR5O75473 907 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 ANXA9O76027 345 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 ITGB5P18084 799 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 RENBPP51606 427 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 PABPC1LQ4VXU2 614 aaKnown RBP14.33□□□□□ -0.12
LDLR-201ENST00000252444 TSPAN17Q96FV3 270 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 SCYL1Q96KG9 808 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 OSMRQ99650 979 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 GPRC5CQ9NQ84 441 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 NDUFAB1O14561 156 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 AKAP3O75969 853 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 C2orf54Q08AI8 447 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 RAB42Q8N4Z0 105 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 RAB3IPQ96QF0 476 aaPredicted RBP14.33□□□□□ -0.12
LDLR-201ENST00000252444 RNF208Q9H0X6 261 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 DNAJC18Q9H819 358 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 PTPN22Q9Y2R2 807 aa14.33□□□□□ -0.12
LDLR-201ENST00000252444 EXOC1LA0A1B0GW35 172 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 AP1G2O75843 785 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 TGM2P21980 687 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 HPDP32754 393 aaPredicted RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 EARS2Q5JPH6 523 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 MFSD14AQ96MC6 490 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 SYT15Q9BQS2 421 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 TMEM117Q9H0C3 514 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 VIPAS39Q9H9C1 493 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.32□□□□□ -0.12
LDLR-201ENST00000252444 RAD54BQ9Y620 910 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 CD44P16070 742 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 DYNLT1P63172 113 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 SV2AQ7L0J3 742 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 ZMYM5Q9UJ78 669 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 ATP11BQ9Y2G3 1177 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 C3orf70A6NLC5 250 aaPredicted RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 PMLP29590 882 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 EIF3EP60228 445 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 YWHAHQ04917 246 aaPredicted RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 DCLRE1AQ6PJP8 1040 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 TSHZ1Q6ZSZ6 1077 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 NECAB2Q7Z6G3 386 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 HELQQ8TDG4 1101 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 HSFY1Q96LI6 401 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 NFKBIZQ9BYH8 718 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 DMAP1Q9NPF5 467 aaPredicted RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 SCAF8Q9UPN6 1271 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 IPPQ9Y573 584 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 CHEK2O96017 543 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 APLP1P51693 650 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 EP400NLQ6ZTU2 488 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 MMGT1Q8N4V1 131 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 GPATCH11Q8N954 259 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 EXD1Q8NHP7 514 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 SLC35C1Q96A29 364 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 ALKBH8Q96BT7 664 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 ZNF512Q96ME7 567 aaPredicted RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 XAB2Q9HCS7 855 aaKnown RBP14.32□□□□□ -0.12
LDLR-201ENST00000252444 CISHQ9NSE2 258 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 NAGPAQ9UK23 515 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 CDY2AQ9Y6F7 541 aa14.32□□□□□ -0.12
LDLR-201ENST00000252444 SF3B1O75533 1304 aaKnown RBP eCLIP14.31□□□□□ -0.129e-6■■■■■ 68.9
LDLR-201ENST00000252444 PPIGQ13427 754 aaKnown RBP eCLIP14.31□□□□□ -0.123e-7■■□□□ 11.4
LDLR-201ENST00000252444 MGAT5BQ3V5L5 792 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 SDE2Q6IQ49 451 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 ANKS3Q6ZW76 656 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 LRRC49Q8IUZ0 686 aa14.31□□□□□ -0.12
LDLR-201ENST00000252444 ZBED3Q96IU2 234 aaPredicted RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms