RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MDH1BQ5I0G3 518 aa14.15□□□□□ -0.14
SF3A1-201ENST00000215793 RIN2Q8WYP3 895 aaPredicted RBP14.15□□□□□ -0.14
SF3A1-201ENST00000215793 SLITRK1Q96PX8 696 aa14.15□□□□□ -0.14
SF3A1-201ENST00000215793 CELF4Q9BZC1 486 aaKnown RBP14.15□□□□□ -0.14
SF3A1-201ENST00000215793 MUC3BQ9H195 1237 aa14.15□□□□□ -0.14
SF3A1-201ENST00000215793 ZNF556Q9HAH1 456 aa14.15□□□□□ -0.14
SF3A1-201ENST00000215793 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.15□□□□□ -0.14
SF3A1-201ENST00000215793 CCDC78A2IDD5 438 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 CLASP2O75122 1294 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ANXA9O76027 345 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 HMBSP08397 361 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 FAM200BP0CF97 657 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 GEMIN4P57678 1058 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 VPS72Q15906 364 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 IFNEQ86WN2 208 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 VPS37AQ8NEZ2 397 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 IPMKQ8NFU5 416 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ZNF507Q8TCN5 953 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ANKRD7Q92527 254 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ZNF669Q96BR6 464 aaPredicted RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 HPS5Q9UPZ3 1129 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 PJA2O43164 708 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 SEC24DO94855 1032 aaPredicted RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 RPS12P25398 132 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ANGEL2Q5VTE6 544 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 CCNJLQ8IV13 435 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 TPCN2Q8NHX9 752 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 MANSC1Q9H8J5 431 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 SMARCAL1Q9NZC9 954 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 CD274Q9NZQ7 290 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 KIAA1257Q9ULG3 409 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 UBQLN1Q9UMX0 589 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ZBTB12Q9Y330 459 aaPredicted RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 RNF17Q9BXT8 1623 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 CCT8L1PA6NM43 557 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 AIM2O14862 343 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ATMINO43313 823 aaPredicted RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 PSTPIP1O43586 416 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ATICP31939 592 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 RPS6P62753 249 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 TWF1Q12792 350 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 CUL2Q13617 745 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 TRIP10Q15642 601 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 DGKDQ16760 1214 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 GOLGA7BQ2TAP0 167 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 DDX42Q86XP3 938 aaKnown RBP eCLIP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 ZSWIM1Q9BR11 485 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 KBTBD13C9JR72 458 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 FDFT1P37268 417 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 PCSK7Q16549 785 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 FIGNQ5HY92 759 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 TJAP1Q5JTD0 557 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 DDX53Q86TM3 631 aaKnown RBP14.14□□□□□ -0.15
SF3A1-201ENST00000215793 LRRC71Q8N4P6 559 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 SELENONQ9NZV5 590 aa14.14□□□□□ -0.15
SF3A1-201ENST00000215793 PRRG1O14668 218 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 ADCY3O60266 1144 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 TBC1D4O60343 1298 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SLC2A3P11169 496 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 MAPK7Q13164 816 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 ACBD5Q5T8D3 534 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 COL23A1Q86Y22 540 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 GPRC5AQ8NFJ5 357 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 METTL5Q9NRN9 209 aaKnown RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 A0A0G2JLW4 131 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SUPT3HB4E1H0 165 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SMTNL2Q2TAL5 461 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 LRRC6Q86X45 466 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 CHSY1Q86X52 802 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 AGBL1Q96MI9 1066 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 PABPC3Q9H361 631 aaKnown RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SETD1BQ9UPS6 1966 aaKnown RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 JCADQ9P266 1359 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 MSH4O15457 936 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 NCAM1P13591 858 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 HARS2P49590 506 aaKnown RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 KLK7P49862 253 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 RAP1GDS1P52306 607 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 CCDC85BQ15834 202 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 FAM83EQ2M2I3 478 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 PPP4R4Q6NUP7 873 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 ADCK2Q7Z695 626 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 FAM71DQ8N9W8 422 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 UBA3Q8TBC4 463 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 KLF6Q99612 283 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SEPT5Q99719 369 aaPredicted RBP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 PI4K2AQ9BTU6 479 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 GGA3Q9NZ52 723 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 OGTO15294 1046 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 ZC3H11AO75152 810 aaKnown RBP eCLIP14.13□□□□□ -0.15
SF3A1-201ENST00000215793 FKBP9O95302 570 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 KRT8P05787 483 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 KCNK10P57789 538 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 SKOR1P84550 965 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 MGAT5BQ3V5L5 792 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 TRIM65Q6PJ69 517 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 NYAP1Q6ZVC0 841 aa14.13□□□□□ -0.15
SF3A1-201ENST00000215793 FKBP9P1Q75LS8 142 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms