RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	YNL046W	P53956	172 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	HHT1	P61830	136 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	IZH1	Q03419	316 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	MCH4	Q08268	501 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	NPC2	Q12408	173 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	YOL162W	P0CF19	215 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	SLM6	P38343	150 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	YNL195C	P40168	261 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	MOB2	P43563	287 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	SNO4	Q04902	237 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	ASR1	Q06834	288 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	HSP33	Q08914	237 aa	Known RBP	4.16	□□□□□ -1.74
NUP116	YMR047C	HSP32	Q08992	237 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	RDI1	Q12434	202 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	VBA1	Q04301	562 aa		4.16	□□□□□ -1.74
NUP116	YMR047C	PST2	Q12335	198 aa	Known RBP	4.16	□□□□□ -1.74
NUP116	YMR047C	YEL009C-A	A0A023PZF2	135 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	YAL064W-B	O13512	126 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	LSB5	P25369	354 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.74	not detected
NUP116	YMR047C	PMU1	P36069	295 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	APS2	Q00381	147 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	HLR1	Q04429	423 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	MCT1	Q12283	360 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	YPL119C-A	Q3E751	87 aa		4.15	□□□□□ -1.74
NUP116	YMR047C	TIP1	P27654	210 aa	Predicted RBP	4.15	□□□□□ -1.75
NUP116	YMR047C	SFK1	P35735	353 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	MRPL24	P36525	258 aa	Predicted RBP	4.15	□□□□□ -1.75
NUP116	YMR047C	YBR184W	P38299	523 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	YJR015W	P47090	510 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	WSC2	P53832	503 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	FMP41	P53889	259 aa	Known RBP	4.15	□□□□□ -1.75
NUP116	YMR047C	RCE1	Q03530	315 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	IZH2	Q12442	317 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	PAI3	P01094	68 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	HMRA1	P0CY11	126 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	PRE2	P30656	287 aa	Known RBP	4.15	□□□□□ -1.75
NUP116	YMR047C	OAC1	P32332	324 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	PAM16	P42949	149 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	YFL065C	P43539	102 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	YFL051C	P43552	160 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	ALG13	P53178	202 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	INP1	Q03694	420 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	FCF1	Q05498	189 aa	Predicted RBP	4.15	□□□□□ -1.75
NUP116	YMR047C	ANT1	Q06497	328 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	YPR203W	Q08994	102 aa		4.15	□□□□□ -1.75
NUP116	YMR047C	MSW1	P04803	379 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	UTR5	P32630	166 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	ECM34	P38728	170 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	MTC6	P38849	526 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	YFR054C	P43622	192 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	YGR039W	P53225	103 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	SDH7	Q04401	133 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	ADH1	P00330	348 aa	Known RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	RPS28B	P0C0X0	67 aa	Known RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	PUT3	P25502	979 aa	Predicted RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	TRR1	P29509	319 aa	Known RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	NNK1	P36003	928 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	YIL169C	P40442	995 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	AIM34	Q03673	198 aa		4.14	□□□□□ -1.75
NUP116	YMR047C	GRH1	Q04410	372 aa	Known RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.14	□□□□□ -1.75
NUP116	YMR047C	STE18	P18852	110 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	CLB6	P32943	380 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	SOR1	P35497	357 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	PRS4	P38063	326 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	LIP2	Q06005	328 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	SOR2	Q07786	357 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	MBF1	O14467	151 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	RPL12A	P0CX53	165 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	RPL12B	P0CX54	165 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	YFL068W	P0CX99	160 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	YLL066W-A	P0CY00	160 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	YLL067W-A	P0CY01	160 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	FRM2	P37261	193 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	YJL218W	P40892	196 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	SMD3	P43321	101 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	YJR096W	P47137	282 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	SIP18	P50263	79 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	POM34	Q12445	299 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	COA6	Q3E846	104 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	PCL2	P25693	308 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	GCV3	P39726	170 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	YIF1	P53845	314 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	UTP23	Q12339	254 aa	Known RBP	4.13	□□□□□ -1.75
NUP116	YMR047C	RAX2	Q12465	1220 aa		4.13	□□□□□ -1.75
NUP116	YMR047C	RPS23A	P0CX29	145 aa	Known RBP	4.12	□□□□□ -1.75
NUP116	YMR047C	RPS23B	P0CX30	145 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	YNL198C	P40166	100 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	PRM5	P40476	318 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	LYS5	P50113	272 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	TAZ1	Q06510	381 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	MIM1	Q08176	113 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	HUT1	Q12520	339 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	YHR214C-E	Q8TGK0	99 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	DYN1	P36022	4092 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	YKL187C	P34231	750 aa		4.12	□□□□□ -1.75
NUP116	YMR047C	RPL14B	P38754	138 aa	Known RBP	4.12	□□□□□ -1.75
NUP116	YMR047C	UBI4	P0CG63	381 aa	Known RBP	4.11	□□□□□ -1.75
NUP116	YMR047C	DUG3	P53871	357 aa		4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 111.7 ms