RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	SHD	Q96IW2	340 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ASB16	Q96NS5	453 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	LPIN3	Q9BQK8	851 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	DNAJC25	Q9H1X3	360 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZFP14	Q9HCL3	533 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	AVEN	Q9NQS1	362 aa	Predicted RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	OLFML3	Q9NRN5	406 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	ABI2	Q9NYB9	513 aa	Predicted RBP	11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	GTF3C3	Q9Y5Q9	886 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141		R4GN57	208 aa		11.11	□□□□□ -0.63
SCN1A-222	ENST00000642141	MYH15	Q9Y2K3	1946 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	KANSL1L	A0AUZ9	987 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	HCRT	O43612	131 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	EXTL3	O43909	919 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	YEATS4	O95619	227 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	F13A1	P00488	732 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	ACAT1	P24752	427 aa	Known RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	GDI1	P31150	447 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	AFM	P43652	599 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	DNM1	Q05193	864 aa	Known RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	MYBPC2	Q14324	1141 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	SV2C	Q496J9	727 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	VIT	Q6UXI7	678 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	CBWD2	Q8IUF1	395 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	BRSK2	Q8IWQ3	736 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	NELFCD	Q8IXH7	590 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	THEM5	Q8N1Q8	247 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	C1orf127	Q8N9H9	656 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	IQUB	Q8NA54	791 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	STKLD1	Q8NE28	680 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	TTC8	Q8TAM2	541 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	SMARCD2	Q92925	531 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	RSPRY1	Q96DX4	576 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	BORCS6	Q96GS4	357 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	TRMT61B	Q9BVS5	477 aa	Known RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	LRRC3	Q9BY71	257 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	TRIM9	Q9C026	710 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	MTMR12	Q9C0I1	747 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	ZCWPW1	Q9H0M4	648 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	BRD9	Q9H8M2	597 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	TMLHE	Q9NVH6	421 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	KBTBD4	Q9NVX7	518 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	DSE	Q9UL01	958 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	MAFF	Q9ULX9	164 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	NDRG2	Q9UN36	371 aa	Known RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	PCDHA7	Q9UN72	937 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	CFAP54	Q96N23	3096 aa		11.1	□□□□□ -0.63
SCN1A-222	ENST00000642141	NCAN	O14594	1321 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	FRYL	O94915	3013 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CLIC2	O15247	247 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CYP11A1	P05108	521 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	GART	P22102	1010 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	GABRR2	P28476	465 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	GPR15	P49685	360 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CYP2J2	P51589	502 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	EPHA5	P54756	1037 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CYP4F8	P98187	520 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	PFKP	Q01813	784 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	PLD1	Q13393	1074 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	TAF12	Q16514	161 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CCDC142	Q17RM4	750 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	SDHAF4	Q5VUM1	108 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	GAREM2	Q75VX8	874 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	TMC8	Q8IU68	726 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	C1orf210	Q8IVY1	113 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	PDCL2	Q8N4E4	241 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	OR5B17	Q8NGF7	314 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	KCNG4	Q8TDN1	519 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	CACTIN	Q8WUQ7	758 aa	Known RBP	11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	PI4K2A	Q9BTU6	479 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	SMG9	Q9H0W8	520 aa	Known RBP	11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	TNMD	Q9H2S6	317 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	ATXN3L	Q9H3M9	355 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	TMEM206	Q9H813	350 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	SPATA6	Q9NWH7	488 aa	Predicted RBP	11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	DLGAP2	Q9P1A6	1054 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	SNX9	Q9Y5X1	595 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	MORC2	Q9Y6X9	1032 aa	Predicted RBP	11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	PTPRJ	Q12913	1337 aa		11.09	□□□□□ -0.63
SCN1A-222	ENST00000642141	SCN1A	P35498	2009 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	HEPACAM2	A8MVW5	462 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	MICAL2	O94851	1124 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	LDHA	P00338	332 aa	Known RBP	11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	ATF6	P18850	670 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	TARS	P26639	723 aa	Known RBP	11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	NBL1	P41271	181 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	AMPD3	Q01432	767 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	PRKCQ	Q04759	706 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	CUL4B	Q13620	913 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	ALCAM	Q13740	583 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	GPR158	Q5T848	1215 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	STXBP4	Q6ZWJ1	553 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	ARID3B	Q8IVW6	561 aa	Predicted RBP	11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	GPD1L	Q8N335	351 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	NKD2	Q969F2	451 aa	Predicted RBP	11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	PSMG2	Q969U7	264 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	CCDC127	Q96BQ5	260 aa		11.08	□□□□□ -0.64
SCN1A-222	ENST00000642141	ZFYVE19	Q96K21	471 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms