RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NR3C2P08235 984 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 TMEM191BP0C7N4 346 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ATF7P17544 494 aaPredicted RBP21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 KRT15P19012 456 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 MMP8P22894 467 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 PTPN7P35236 360 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 GPS1Q13098 491 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 MFSD7Q6UXD7 560 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 KLHL11Q9NVR0 708 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 RBAKQ9NYW8 714 aaPredicted RBP21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 SLC24A2Q9UI40 661 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 SHOC2Q9UQ13 582 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 HGSO14964 777 aaPredicted RBP21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ATP2A1O14983 1001 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ALOX15BO15296 676 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 DCTN3O75935 186 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ATP13A4Q4VNC1 1196 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZFYVE27Q5T4F4 411 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 VSIG1Q86XK7 387 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 KIRREL3Q8IZU9 778 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 ERP27Q96DN0 273 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 LRRC37BQ96QE4 947 aa21.24■□□□□ 0.99
SYNGAP1-227ENST00000638142 DIAPH2O60879 1101 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 PIGRP01833 764 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZSCAN5DPP0CG00 497 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 ALDH3A1P30838 453 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CCNG1P51959 295 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 NOP14P78316 857 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 BAATQ14032 418 aaPredicted RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 PKN2Q16513 984 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 SLFN12LQ6IEE8 588 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 SPOCD1Q6ZMY3 1216 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CENPUQ71F23 418 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 BZW1Q7L1Q6 419 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZNF570Q96NI8 536 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CGRRF1Q99675 332 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 VPS37BQ9H9H4 285 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 JPH1Q9HDC5 661 aaPredicted RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 EDF1O60869 148 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 LDHAP00338 332 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CALB1P05937 261 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 SSTR3P32745 418 aaPredicted RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 VCPP55072 806 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 RPL7AP62424 266 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 FASTKD3Q14CZ7 662 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 OASLQ15646 514 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 RNASEH2BQ5TBB1 312 aaKnown RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 ERICH1Q86X53 443 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CCDC60Q8IWA6 550 aaPredicted RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 AGGF1Q8N302 714 aaeCLIP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 LRRC8CQ8TDW0 803 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 NKD2Q969F2 451 aaPredicted RBP21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CHKBQ9Y259 395 aa21.23■□□□□ 0.99
SYNGAP1-227ENST00000638142 CCDC189A1A4V9 331 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ECM2O94769 699 aaPredicted RBP21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ATP2A2P16615 1042 aaKnown RBP21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 DGKZQ13574 1117 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 INPP5DQ92835 1189 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 PCDH9Q9HC56 1237 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 RNF146Q9NTX7 359 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 SLC5A4Q9NY91 659 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 PSMC3IPQ9P2W1 217 aaPredicted RBP21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 NUB1Q9Y5A7 615 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 IVNS1ABPQ9Y6Y0 642 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ITGAVP06756 1048 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 CA4P22748 312 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZNF132P52740 706 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZBED8Q8IZ13 594 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZNF606Q8WXB4 792 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 UTP4Q969X6 686 aaKnown RBP21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 TMEM237Q96Q45 408 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 KIF9Q9HAQ2 790 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 SSU72Q9NP77 194 aaKnown RBP21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 GINM1Q9NU53 330 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 SLC9A2Q9UBY0 812 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZNF541Q9H0D2 1346 aa21.22■□□□□ 0.99
SYNGAP1-227ENST00000638142 hCG_1818297A0A087WSY0 165 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 TCF4P15884 667 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 RPA3P35244 121 aaPredicted RBP21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 EMC2Q15006 297 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 XKR3Q5GH77 459 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 TFDP3Q5H9I0 405 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 SPDYAQ5MJ70 313 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 SPOCK2Q92563 424 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 DDX56Q9NY93 547 aaKnown RBP21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 VWA5AO00534 786 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 TYROBPO43914 113 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 NEBLO76041 1014 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 LSM8O95777 96 aaKnown RBP21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 ETS1P14921 441 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZNF252P-AS1Q0IIN9 211 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 MTERF2Q49AM1 385 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 C4orf33Q8N1A6 199 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 AGBL3Q8NEM8 1001 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 ZBED3Q96IU2 234 aaPredicted RBP21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 CDHR1Q96JP9 859 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 ANKRD27Q96NW4 1050 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 PHACTR1Q9C0D0 580 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 HAPLN2Q9GZV7 340 aa21.21■□□□□ 0.99
SYNGAP1-227ENST00000638142 SLCO1B3Q9NPD5 702 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms