RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 DSTYKQ6XUX3 929 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 ITIH5Q86UX2 942 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 OR10T2Q8NGX3 314 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 NETO1Q8TDF5 533 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 TMEM209Q96SK2 561 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 ZCWPW1Q9H0M4 648 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 RPF1Q9H9Y2 349 aaKnown RBP17.82■□□□□ 0.44
CLN3-255ENST00000637100 ZMYM5Q9UJ78 669 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 RAB23Q9ULC3 237 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 USP18Q9UMW8 372 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 SLC27A5Q9Y2P5 690 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 KIF3AQ9Y496 699 aa17.82■□□□□ 0.44
CLN3-255ENST00000637100 KIF26AQ9ULI4 1882 aaPredicted RBP17.82■□□□□ 0.44
CLN3-255ENST00000637100 VWA3AA6NCI4 1184 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SOBPA7XYQ1 873 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 HNRNPDLO14979 420 aaKnown RBP17.81■□□□□ 0.44
CLN3-255ENST00000637100 FOXD2O60548 495 aaPredicted RBP17.81■□□□□ 0.44
CLN3-255ENST00000637100 NEFLP07196 543 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 ODC1P11926 461 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 ATF6P18850 670 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 ABCD1P33897 745 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SOX9P48436 509 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 TUFMP49411 452 aaKnown RBP17.81■□□□□ 0.44
CLN3-255ENST00000637100 PLCB2Q00722 1185 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 DMWDQ09019 674 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SPEM2Q0P670 501 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SMARCB1Q12824 385 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 JADE1Q6IE81 842 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 ARMCX5Q6P1M9 558 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 YAF2Q8IY57 180 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 CNTNAP3BQ96NU0 1288 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 CNTNAP3Q9BZ76 1288 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SLITRK6Q9H5Y7 841 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 TASP1Q9H6P5 420 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 SEMA4GQ9NTN9 838 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 RBM12Q9NTZ6 932 aaKnown RBP17.81■□□□□ 0.44
CLN3-255ENST00000637100 C2CD2Q9Y426 696 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 TSC2P49815 1807 aa17.81■□□□□ 0.44
CLN3-255ENST00000637100 CCDC163A0A0D9SF12 145 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 SLC38A8A6NNN8 435 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 CHURC1-FNTBB4DL54 471 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 TRAK2O60296 914 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 PRAMEF12O95522 483 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 ADRB1P08588 477 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 GABRR2P28476 465 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 FNTBP49356 437 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 SIM2Q14190 667 aaPredicted RBP17.8■□□□□ 0.44
CLN3-255ENST00000637100 Q6ZS52 159 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 WDR5BQ86VZ2 330 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 C2orf15Q8WU43 125 aaKnown RBP17.8■□□□□ 0.44
CLN3-255ENST00000637100 BICD1Q96G01 975 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 PLIN2Q99541 437 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 FAM83CQ9BQN1 747 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 ATXN3LQ9H3M9 355 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 PARVGQ9HBI0 331 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 C2orf42Q9NWW7 574 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 GTSE1Q9NYZ3 720 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 DSEQ9UL01 958 aa17.8■□□□□ 0.44
CLN3-255ENST00000637100 DCDC2BA2VCK2 349 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 NFICP08651 508 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 KPNA1P52294 538 aaPredicted RBP17.79■□□□□ 0.44
CLN3-255ENST00000637100 ZRSR1Q15695 479 aaKnown RBP17.79■□□□□ 0.44
CLN3-255ENST00000637100 GPR158Q5T848 1215 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 TMEM150AQ86TG1 271 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 GPBP1Q86WP2 473 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 BPIFB1Q8TDL5 484 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 CHFRQ96EP1 664 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 CDK5RAP3Q96JB5 506 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 MSTO1Q9BUK6 570 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 STRA6Q9BX79 667 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 SLC46A2Q9BY10 475 aa17.79■□□□□ 0.44
CLN3-255ENST00000637100 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.79■□□□□ 0.44
CLN3-255ENST00000637100 ANKRD63C9JTQ0 380 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 SOAT2O75908 522 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 F11P03951 625 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 CDC25CP30307 473 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 MATR3P43243 847 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-255ENST00000637100 TMEM132DQ14C87 1099 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 ARHGAP15Q53QZ3 475 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 TMEM196Q5HYL7 178 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 CRELD2Q6UXH1 353 aaPredicted RBP17.78■□□□□ 0.44
CLN3-255ENST00000637100 PRR23CQ6ZRP0 262 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 LRRTM3Q86VH5 581 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 MYCT1Q8N699 235 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 SPPL2BQ8TCT7 592 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 ZFYVE19Q96K21 471 aa17.78■□□□□ 0.44
CLN3-255ENST00000637100 DPYSL4O14531 572 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 TRDMT1O14717 391 aaKnown RBP17.77■□□□□ 0.44
CLN3-255ENST00000637100 TM4SF5O14894 197 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 PPP1R37O75864 691 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 HAPLN1P10915 354 aaPredicted RBP17.77■□□□□ 0.44
CLN3-255ENST00000637100 HMGA1P17096 107 aaKnown RBP17.77■□□□□ 0.44
CLN3-255ENST00000637100 MCM2P49736 904 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 LIMK1P53667 647 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 LPAL2Q16609 132 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 ITPRIPL2Q3MIP1 535 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 C8orf34Q49A92 452 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 NT5DC4Q86YG4 428 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 CMTM8Q8IZV2 173 aa17.77■□□□□ 0.44
CLN3-255ENST00000637100 LOXL4Q96JB6 756 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms